Difference: CemCourseMaterials12 (1 vs. 29)

Revision 2930 Sep 2013 - Main.DavidStokes

META TOPICPARENT	name="CemCourseGroup"

Contents

Dec 4 - Molecular Fitting - Willy Wriggers

NYSBC12.ppt: Molecular fitting lecture Wriggers 2012
Molecular_Fitting-20121204_2102-1.arf: Molecular fitting recording Wriggers 2012

Nov 26 - Nov 30 Practicals rescheduled from week of Oct 26

Nov 26 RCT I 10am-1 pm
Nov 27 RCT II/ Commonlines 10am-1 pm
Nov 28 Reference based 10 am-1 pm
Nov 29 finish single particle 10am-1 pm
Nov 30 IMOD 10 am- 1 pm

Nov 20 - Helical Reconstruction - Hernando Sosa

Helical3d_reconst_v3.pdf: Helical Reconstruction Lecture
- Helical_Processing-20121120_2113-1.arf: Helical Reconstruction recording

Nov 13 2D Crystallography II - Iban Ubarretxena

gonenetal.pdf: paper for discussion nov 15
Lecture
- Iban2DX_Lecture_2-20121113_2101-1.arf: Second 2dx lecture

Nov 6 2D Crystallography I - Iban Ubarretxena

Paper for discussion Nov 8 isac.pdf
Lecture
- 2d_crystallography_I-20121106_2104-1.arf: 2DX Lecture 1

Oct 23 - Single Particle III - Joachim Frank

Lecture
- NYSBC_2010-3.ppt: single particle lecture iii slides
- Single_Particle_III-20121023_2006-1.arf: Single Particle JFrank Lecture 3

Oct 16 - Single Particle II - Joachim Frank

Lecture
- NYSBC_2012-2.ppt: single particle lecture ii slides
- Single_Particle_lecture_II-20121016_1957-1.arf: Single Particle JFrank Lecture 2

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I
- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1
- Paper for discussion next week (Oct 18)
- random conical tilt

Added:

>
>

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2
- NYSBC-EM4-tomography2.pptx: Tomography II powerpoint

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)

Added:

>
>

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle Lecture II JFrank" date="1351203522" name="Single_Particle_lecture_II-20121016_1957-1.arf" path="Single_Particle_lecture_II-20121016_1957-1.arf" size="267146814" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="video of electron tomography lecture 1" date="1348868808" name="Electron_Tomography_1-20120925_2010-1.arf" path="Electron_Tomography_1-20120925_2010-1.arf" size="201965622" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion nov 8" date="1351782576" name="isac.pdf" path="isac.pdf" size="1075641" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion nov 15" date="1352843655" name="gonenetal.pdf" path="gonenetal.pdf" size="573392" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Second 2dx lecture" date="1353082676" name="Iban2DX_Lecture_2-20121113_2101-1.arf" path="Iban2DX_Lecture_2-20121113_2101-1.arf" size="119568835" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Helical_Reconstruction_Lecture" date="1353453006" name="Helical3d_reconst_v3.pdf" path="Helical3d_reconst_v3.pdf" size="5095698" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Helical_Reconstruction_Video" date="1353453173" name="Helical_Processing-20121120_2113-1.arf" path="Helical_Processing-20121120_2113-1.arf" size="175362451" user="Main.MarienaSilvestry" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="Problem Set #1" date="1347998960" name="ProblemSet1_2012.doc" path="ProblemSet1_2012.doc" size="45568" user="Main.DavidStokes" version="1"
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Revision 2817 Sep 2013 - Main.DavidStokes

META TOPICPARENT	name="CemCourseGroup"

Contents

Dec 4 - Molecular Fitting - Willy Wriggers

NYSBC12.ppt: Molecular fitting lecture Wriggers 2012
Molecular_Fitting-20121204_2102-1.arf: Molecular fitting recording Wriggers 2012

Nov 26 - Nov 30 Practicals rescheduled from week of Oct 26

Nov 26 RCT I 10am-1 pm
Nov 27 RCT II/ Commonlines 10am-1 pm
Nov 28 Reference based 10 am-1 pm
Nov 29 finish single particle 10am-1 pm
Nov 30 IMOD 10 am- 1 pm

Nov 20 - Helical Reconstruction - Hernando Sosa

Helical3d_reconst_v3.pdf: Helical Reconstruction Lecture
- Helical_Processing-20121120_2113-1.arf: Helical Reconstruction recording

Nov 13 2D Crystallography II - Iban Ubarretxena

gonenetal.pdf: paper for discussion nov 15
Lecture
- Iban2DX_Lecture_2-20121113_2101-1.arf: Second 2dx lecture

Nov 6 2D Crystallography I - Iban Ubarretxena

Paper for discussion Nov 8 isac.pdf
Lecture
- 2d_crystallography_I-20121106_2104-1.arf: 2DX Lecture 1

Oct 23 - Single Particle III - Joachim Frank

Lecture
- NYSBC_2010-3.ppt: single particle lecture iii slides
- Single_Particle_III-20121023_2006-1.arf: Single Particle JFrank Lecture 3

Oct 16 - Single Particle II - Joachim Frank

Lecture
- NYSBC_2012-2.ppt: single particle lecture ii slides
- Single_Particle_lecture_II-20121016_1957-1.arf: Single Particle JFrank Lecture 2

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I
- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1
- Paper for discussion next week (Oct 18)
- random conical tilt
Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2
- NYSBC-EM4-tomography2.pptx: Tomography II powerpoint

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012

Deleted:

<
<

* paper for discussion nov 8

* Molecular_Fitting-20121204_2102-1.arf: Molecular fitting recording Wriggers 2012

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META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 2731 May 2013 - Main.BillRice

META TOPICPARENT	name="CemCourseGroup"

Contents

Dec 4 - Molecular Fitting - Willy Wriggers

NYSBC12.ppt: Molecular fitting lecture Wriggers 2012
Molecular_Fitting-20121204_2102-1.arf: Molecular fitting recording Wriggers 2012

Nov 26 - Nov 30 Practicals rescheduled from week of Oct 26

Nov 26 RCT I 10am-1 pm
Nov 27 RCT II/ Commonlines 10am-1 pm
Nov 28 Reference based 10 am-1 pm
Nov 29 finish single particle 10am-1 pm
Nov 30 IMOD 10 am- 1 pm

Nov 20 - Helical Reconstruction - Hernando Sosa

Helical3d_reconst_v3.pdf: Helical Reconstruction Lecture
- Helical_Processing-20121120_2113-1.arf: Helical Reconstruction recording

Nov 13 2D Crystallography II - Iban Ubarretxena

gonenetal.pdf: paper for discussion nov 15
Lecture
- Iban2DX_Lecture_2-20121113_2101-1.arf: Second 2dx lecture

Nov 6 2D Crystallography I - Iban Ubarretxena

Paper for discussion Nov 8 isac.pdf
Lecture
- 2d_crystallography_I-20121106_2104-1.arf: 2DX Lecture 1

Oct 23 - Single Particle III - Joachim Frank

Lecture
- NYSBC_2010-3.ppt: single particle lecture iii slides
- Single_Particle_III-20121023_2006-1.arf: Single Particle JFrank Lecture 3

Oct 16 - Single Particle II - Joachim Frank

Lecture
- NYSBC_2012-2.ppt: single particle lecture ii slides
- Single_Particle_lecture_II-20121016_1957-1.arf: Single Particle JFrank Lecture 2

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I
- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1
- Paper for discussion next week (Oct 18)
- random conical tilt
Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Added:

>
>

- NYSBC-EM4-tomography2.pptx: Tomography II powerpoint

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012

Deleted:

<
<

* NYSBC-EM4-tomography2.pptx: Tomography II powerpoint

* paper for discussion nov 8

* Molecular_Fitting-20121204_2102-1.arf: Molecular fitting recording Wriggers 2012

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="Second 2dx lecture" date="1353082676" name="Iban2DX_Lecture_2-20121113_2101-1.arf" path="Iban2DX_Lecture_2-20121113_2101-1.arf" size="119568835" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Helical_Reconstruction_Lecture" date="1353453006" name="Helical3d_reconst_v3.pdf" path="Helical3d_reconst_v3.pdf" size="5095698" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Helical_Reconstruction_Video" date="1353453173" name="Helical_Processing-20121120_2113-1.arf" path="Helical_Processing-20121120_2113-1.arf" size="175362451" user="Main.MarienaSilvestry" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Windows" date="1347999324" name="nbr2player.msi" path="nbr2player.msi" size="11850752" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture I" date="1349812674" name="NYSBC_2010_1.ppt" path="NYSBC_2010_1.ppt" size="15920128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Problem Set #1" date="1347998960" name="ProblemSet1_2012.doc" path="ProblemSet1_2012.doc" size="45568" user="Main.DavidStokes" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 2605 Dec 2012 - Main.MarienaSilvestry

META TOPICPARENT	name="CemCourseGroup"

Contents

Added:

>
>

Dec 4 - Molecular Fitting - Willy Wriggers

NYSBC12.ppt: Molecular fitting lecture Wriggers 2012
Molecular_Fitting-20121204_2102-1.arf: Molecular fitting recording Wriggers 2012

Nov 26 - Nov 30 Practicals rescheduled from week of Oct 26

Nov 26 RCT I 10am-1 pm
Nov 27 RCT II/ Commonlines 10am-1 pm
Nov 28 Reference based 10 am-1 pm
Nov 29 finish single particle 10am-1 pm
Nov 30 IMOD 10 am- 1 pm

Nov 20 - Helical Reconstruction - Hernando Sosa

Helical3d_reconst_v3.pdf: Helical Reconstruction Lecture
- Helical_Processing-20121120_2113-1.arf: Helical Reconstruction recording

Nov 13 2D Crystallography II - Iban Ubarretxena

gonenetal.pdf: paper for discussion nov 15
Lecture
- Iban2DX_Lecture_2-20121113_2101-1.arf: Second 2dx lecture

Nov 6 2D Crystallography I - Iban Ubarretxena

Paper for discussion Nov 8 isac.pdf
Lecture
- 2d_crystallography_I-20121106_2104-1.arf: 2DX Lecture 1

Oct 23 - Single Particle III - Joachim Frank

Lecture
- NYSBC_2010-3.ppt: single particle lecture iii slides
- Single_Particle_III-20121023_2006-1.arf: Single Particle JFrank Lecture 3

Oct 16 - Single Particle II - Joachim Frank

Lecture
- NYSBC_2012-2.ppt: single particle lecture ii slides
- Single_Particle_lecture_II-20121016_1957-1.arf: Single Particle JFrank Lecture 2

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I
- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1
- Paper for discussion next week (Oct 18)
- random conical tilt
Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012

* NYSBC-EM4-tomography2.pptx: Tomography II powerpoint

* paper for discussion nov 8

Added:

>
>

* Molecular_Fitting-20121204_2102-1.arf: Molecular fitting recording Wriggers 2012

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
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Added:

>
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META FILEATTACHMENT	attr="" autoattached="1" comment="Molecular fitting recording Wriggers 2012" date="1354746053" name="Molecular_Fitting-20121204_2102-1.arf" path="Molecular_Fitting-20121204_2102-1.arf" size="279473150" user="Main.MarienaSilvestry" version="1"

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META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"

Added:

>
>

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META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion nov 8" date="1351782576" name="isac.pdf" path="isac.pdf" size="1075641" user="Main.BillRice" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="recording of FFT lecture" date="1348495965" name="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" path="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" size="17907486" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Windows" date="1347999324" name="nbr2player.msi" path="nbr2player.msi" size="11850752" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture I" date="1349812674" name="NYSBC_2010_1.ppt" path="NYSBC_2010_1.ppt" size="15920128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Problem Set #1" date="1347998960" name="ProblemSet1_2012.doc" path="ProblemSet1_2012.doc" size="45568" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Mac" date="1347999281" name="webexnbrplayer_intel.dmg" path="webexnbrplayer_intel.dmg" size="7772598" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 2520 Nov 2012 - Main.MarienaSilvestry

META TOPICPARENT	name="CemCourseGroup"

Contents

Nov 26 - Nov 30 Practicals rescheduled from week of Oct 26

Nov 26 - Nov 30 Practicals rescheduled from week of Oct 26

Nov 26 RCT I 10am-1 pm
Nov 27 RCT II/ Commonlines 10am-1 pm
Nov 28 Reference based 10 am-1 pm
Nov 29 finish single particle 10am-1 pm
Nov 30 IMOD 10 am- 1 pm

Added:

>
>

Nov 20 - Helical Reconstruction - Hernando Sosa

Helical3d_reconst_v3.pdf: Helical Reconstruction Lecture
- Helical_Processing-20121120_2113-1.arf: Helical Reconstruction recording

Nov 13 2D Crystallography II - Iban Ubarretxena

gonenetal.pdf: paper for discussion nov 15
Lecture
- Iban2DX_Lecture_2-20121113_2101-1.arf: Second 2dx lecture

Nov 6 2D Crystallography I - Iban Ubarretxena

Paper for discussion Nov 8 isac.pdf
Lecture
- 2d_crystallography_I-20121106_2104-1.arf: 2DX Lecture 1

Oct 23 - Single Particle III - Joachim Frank

Lecture
- NYSBC_2010-3.ppt: single particle lecture iii slides
- Single_Particle_III-20121023_2006-1.arf: Single Particle JFrank Lecture 3

Oct 16 - Single Particle II - Joachim Frank

Lecture
- NYSBC_2012-2.ppt: single particle lecture ii slides
- Single_Particle_lecture_II-20121016_1957-1.arf: Single Particle JFrank Lecture 2

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I
- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1
- Paper for discussion next week (Oct 18)
- random conical tilt
Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012

* NYSBC-EM4-tomography2.pptx: Tomography II powerpoint

* paper for discussion nov 8

Deleted:

<
<

Deleted:

<
<

d126 1

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Homework for Fourier lecture" date="1348007165" name="Homework_sept_18.docx" path="Homework_sept_18.docx" size="17649" user="Main.BillRice" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle Lecture II JFrank" date="1351203522" name="Single_Particle_lecture_II-20121016_1957-1.arf" path="Single_Particle_lecture_II-20121016_1957-1.arf" size="267146814" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="video of electron tomography lecture 1" date="1348868808" name="Electron_Tomography_1-20120925_2010-1.arf" path="Electron_Tomography_1-20120925_2010-1.arf" size="201965622" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion nov 8" date="1351782576" name="isac.pdf" path="isac.pdf" size="1075641" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion nov 15" date="1352843655" name="gonenetal.pdf" path="gonenetal.pdf" size="573392" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Second 2dx lecture" date="1353082676" name="Iban2DX_Lecture_2-20121113_2101-1.arf" path="Iban2DX_Lecture_2-20121113_2101-1.arf" size="119568835" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Helical_Reconstruction_Lecture" date="1353453006" name="Helical3d_reconst_v3.pdf" path="Helical3d_reconst_v3.pdf" size="5095698" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="Helical_Reconstruction_Video" date="1353453173" name="Helical_Processing-20121120_2113-1.arf" path="Helical_Processing-20121120_2113-1.arf" size="175362451" user="Main.MarienaSilvestry" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="lecture on Fourier transforms" date="1348007575" name="lecture-sept18_2012.pptx" path="lecture-sept18_2012.pptx" size="14599919" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="recording of FFT lecture" date="1348495965" name="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" path="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" size="17907486" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Windows" date="1347999324" name="nbr2player.msi" path="nbr2player.msi" size="11850752" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture I" date="1349812674" name="NYSBC_2010_1.ppt" path="NYSBC_2010_1.ppt" size="15920128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Problem Set #1" date="1347998960" name="ProblemSet1_2012.doc" path="ProblemSet1_2012.doc" size="45568" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Mac" date="1347999281" name="webexnbrplayer_intel.dmg" path="webexnbrplayer_intel.dmg" size="7772598" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 2416 Nov 2012 - Main.MarienaSilvestry

META TOPICPARENT	name="CemCourseGroup"

Contents

Nov 26 - Nov 30 Practicals rescheduled from week of Oct 26

Nov 26 RCT I 10am-1 pm
Nov 27 RCT II/ Commonlines 10am-1 pm
Nov 28 Reference based 10 am-1 pm
Nov 29 finish single particle 10am-1 pm
Nov 30 IMOD 10 am- 1 pm

Nov 13 2D Crystallography II - Iban Ubarretxena

gonenetal.pdf: paper for discussion nov 15
Lecture

Added:

>
>

- Iban2DX_Lecture_2-20121113_2101-1.arf: Second 2dx lecture

Nov 6 2D Crystallography I - Iban Ubarretxena

Paper for discussion Nov 8 isac.pdf
Lecture

Changed:

<
<

- * 2d_crystallography_I-20121106_2104-1.arf: 2DX Lecture 1

>
>

- 2d_crystallography_I-20121106_2104-1.arf: 2DX Lecture 1

Oct 23 - Single Particle III - Joachim Frank

Lecture
- NYSBC_2010-3.ppt: single particle lecture iii slides
- Single_Particle_III-20121023_2006-1.arf: Single Particle JFrank Lecture 3

Oct 16 - Single Particle II - Joachim Frank

Lecture
- NYSBC_2012-2.ppt: single particle lecture ii slides
- Single_Particle_lecture_II-20121016_1957-1.arf: Single Particle JFrank Lecture 2

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I
- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1
- Paper for discussion next week (Oct 18)
- random conical tilt
Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012

* NYSBC-EM4-tomography2.pptx: Tomography II powerpoint

* paper for discussion nov 8

Added:

>
>

d126 1

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Homework for Fourier lecture" date="1348007165" name="Homework_sept_18.docx" path="Homework_sept_18.docx" size="17649" user="Main.BillRice" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle Lecture II JFrank" date="1351203522" name="Single_Particle_lecture_II-20121016_1957-1.arf" path="Single_Particle_lecture_II-20121016_1957-1.arf" size="267146814" user="Main.MarienaSilvestry" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion nov 8" date="1351782576" name="isac.pdf" path="isac.pdf" size="1075641" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion nov 15" date="1352843655" name="gonenetal.pdf" path="gonenetal.pdf" size="573392" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="Second 2dx lecture" date="1353082676" name="Iban2DX_Lecture_2-20121113_2101-1.arf" path="Iban2DX_Lecture_2-20121113_2101-1.arf" size="119568835" user="Main.MarienaSilvestry" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Helical_Reconstruction_Lecture" date="1353453006" name="Helical3d_reconst_v3.pdf" path="Helical3d_reconst_v3.pdf" size="5095698" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="lecture on Fourier transforms" date="1348007575" name="lecture-sept18_2012.pptx" path="lecture-sept18_2012.pptx" size="14599919" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="recording of FFT lecture" date="1348495965" name="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" path="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" size="17907486" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Windows" date="1347999324" name="nbr2player.msi" path="nbr2player.msi" size="11850752" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture I" date="1349812674" name="NYSBC_2010_1.ppt" path="NYSBC_2010_1.ppt" size="15920128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Problem Set #1" date="1347998960" name="ProblemSet1_2012.doc" path="ProblemSet1_2012.doc" size="45568" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Mac" date="1347999281" name="webexnbrplayer_intel.dmg" path="webexnbrplayer_intel.dmg" size="7772598" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 2313 Nov 2012 - Main.BillRice

META TOPICPARENT	name="CemCourseGroup"

Contents

Nov 26 - Nov 30 Practicals rescheduled from week of Oct 26

Nov 26 - Nov 30 Practicals rescheduled from week of Oct 26

Nov 26 RCT I 10am-1 pm
Nov 27 RCT II/ Commonlines 10am-1 pm
Nov 28 Reference based 10 am-1 pm
Nov 29 finish single particle 10am-1 pm
Nov 30 IMOD 10 am- 1 pm

Added:

>
>

Nov 13 2D Crystallography II - Iban Ubarretxena

gonenetal.pdf: paper for discussion nov 15
Lecture

Changed:

<
<

Nov 8 2D Crystallography I - Iban Ubarretxena

>
>

Added:

>
>

Nov 6 2D Crystallography I - Iban Ubarretxena

Paper for discussion Nov 8 isac.pdf
Lecture
- * 2d_crystallography_I-20121106_2104-1.arf: 2DX Lecture 1

Oct 23 - Single Particle III - Joachim Frank

Lecture
- NYSBC_2010-3.ppt: single particle lecture iii slides
- Single_Particle_III-20121023_2006-1.arf: Single Particle JFrank Lecture 3

Oct 16 - Single Particle II - Joachim Frank

Lecture
- NYSBC_2012-2.ppt: single particle lecture ii slides
- Single_Particle_lecture_II-20121016_1957-1.arf: Single Particle JFrank Lecture 2

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I
- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1
- Paper for discussion next week (Oct 18)
- random conical tilt
Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012

* NYSBC-EM4-tomography2.pptx: Tomography II powerpoint

* paper for discussion nov 8

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Homework for Fourier lecture" date="1348007165" name="Homework_sept_18.docx" path="Homework_sept_18.docx" size="17649" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Recording of Lecture" date="1347999045" name="CEM_course_lecture_1-20120911_2012-1.arf" path="CEM_course_lecture_1-20120911_2012-1.arf" size="100034041" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle Lecture II JFrank" date="1351203522" name="Single_Particle_lecture_II-20121016_1957-1.arf" path="Single_Particle_lecture_II-20121016_1957-1.arf" size="267146814" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="video of electron tomography lecture 1" date="1348868808" name="Electron_Tomography_1-20120925_2010-1.arf" path="Electron_Tomography_1-20120925_2010-1.arf" size="201965622" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion nov 8" date="1351782576" name="isac.pdf" path="isac.pdf" size="1075641" user="Main.BillRice" version="1"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion nov 15" date="1352843655" name="gonenetal.pdf" path="gonenetal.pdf" size="573392" user="Main.BillRice" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Helical_Reconstruction_Lecture" date="1353453006" name="Helical3d_reconst_v3.pdf" path="Helical3d_reconst_v3.pdf" size="5095698" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="lecture on Fourier transforms" date="1348007575" name="lecture-sept18_2012.pptx" path="lecture-sept18_2012.pptx" size="14599919" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="recording of FFT lecture" date="1348495965" name="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" path="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" size="17907486" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Windows" date="1347999324" name="nbr2player.msi" path="nbr2player.msi" size="11850752" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture I" date="1349812674" name="NYSBC_2010_1.ppt" path="NYSBC_2010_1.ppt" size="15920128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Problem Set #1" date="1347998960" name="ProblemSet1_2012.doc" path="ProblemSet1_2012.doc" size="45568" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Mac" date="1347999281" name="webexnbrplayer_intel.dmg" path="webexnbrplayer_intel.dmg" size="7772598" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 2208 Nov 2012 - Main.MarienaSilvestry

META TOPICPARENT	name="CemCourseGroup"

Contents

Nov 26 - Nov 30 Practicals rescheduled from week of Oct 26

Nov 26 RCT I 10am-1 pm
Nov 27 RCT II/ Commonlines 10am-1 pm
Nov 28 Reference based 10 am-1 pm
Nov 29 finish single particle 10am-1 pm
Nov 30 IMOD 10 am- 1 pm

Nov 8 2D Crystallography I - Iban Ubarretxena

Paper for discussion Nov 8 isac.pdf

Changed:

<
<

>
>

Lecture

Added:

>
>

- * 2d_crystallography_I-20121106_2104-1.arf: 2DX Lecture 1

Oct 23 - Single Particle III - Joachim Frank

Lecture
- NYSBC_2010-3.ppt: single particle lecture iii slides
- Single_Particle_III-20121023_2006-1.arf: Single Particle JFrank Lecture 3

Oct 16 - Single Particle II - Joachim Frank

Lecture
- NYSBC_2012-2.ppt: single particle lecture ii slides
- Single_Particle_lecture_II-20121016_1957-1.arf: Single Particle JFrank Lecture 2

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I
- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1
- Paper for discussion next week (Oct 18)
- random conical tilt
Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012

* NYSBC-EM4-tomography2.pptx: Tomography II powerpoint

* paper for discussion nov 8

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Homework for Fourier lecture" date="1348007165" name="Homework_sept_18.docx" path="Homework_sept_18.docx" size="17649" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Recording of Lecture" date="1347999045" name="CEM_course_lecture_1-20120911_2012-1.arf" path="CEM_course_lecture_1-20120911_2012-1.arf" size="100034041" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle Lecture II JFrank" date="1351203522" name="Single_Particle_lecture_II-20121016_1957-1.arf" path="Single_Particle_lecture_II-20121016_1957-1.arf" size="267146814" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="video of electron tomography lecture 1" date="1348868808" name="Electron_Tomography_1-20120925_2010-1.arf" path="Electron_Tomography_1-20120925_2010-1.arf" size="201965622" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion nov 8" date="1351782576" name="isac.pdf" path="isac.pdf" size="1075641" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Helical_Reconstruction_Lecture" date="1353453006" name="Helical3d_reconst_v3.pdf" path="Helical3d_reconst_v3.pdf" size="5095698" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="lecture on Fourier transforms" date="1348007575" name="lecture-sept18_2012.pptx" path="lecture-sept18_2012.pptx" size="14599919" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="recording of FFT lecture" date="1348495965" name="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" path="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" size="17907486" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Windows" date="1347999324" name="nbr2player.msi" path="nbr2player.msi" size="11850752" user="Main.DavidStokes" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture I" date="1349812674" name="NYSBC_2010_1.ppt" path="NYSBC_2010_1.ppt" size="15920128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Problem Set #1" date="1347998960" name="ProblemSet1_2012.doc" path="ProblemSet1_2012.doc" size="45568" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Mac" date="1347999281" name="webexnbrplayer_intel.dmg" path="webexnbrplayer_intel.dmg" size="7772598" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 2102 Nov 2012 - Main.BillRice

META TOPICPARENT	name="CemCourseGroup"

Contents

Deleted:

<
<

Nov 8 2D Crystallography I - Iban Ubarretxena

Paper for discussion Nov 8 isac.pdf

Added:

>
>

Nov 26 - Nov 30 Practicals rescheduled from week of Oct 26

Nov 26 RCT I 10am-1 pm
Nov 27 RCT II/ Commonlines 10am-1 pm
Nov 28 Reference based 10 am-1 pm
Nov 29 finish single particle 10am-1 pm
Nov 30 IMOD 10 am- 1 pm

Changed:

<
<

Nov 5 - Nov 9 Practicals rescheduled from week of Oct 26

Nov 5 RCT I 10am-1 pm
Nov 6 RCT II/ Commonlines 1 pm-4 pm
Nov 7 Reference based 10 am-1 pm

>
>

Nov 8 2D Crystallography I - Iban Ubarretxena

Paper for discussion Nov 8 isac.pdf

Deleted:

<
<

Nov 8 finish single particle 1pm - 4pm
Nov 9 IMOD 10 am- 1 pm

Oct 23 - Single Particle III - Joachim Frank

Lecture
- NYSBC_2010-3.ppt: single particle lecture iii slides
- Single_Particle_III-20121023_2006-1.arf: Single Particle JFrank Lecture 3

Oct 16 - Single Particle II - Joachim Frank

Lecture
- NYSBC_2012-2.ppt: single particle lecture ii slides
- Single_Particle_lecture_II-20121016_1957-1.arf: Single Particle JFrank Lecture 2

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I
- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1
- Paper for discussion next week (Oct 18)
- random conical tilt
Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012

* NYSBC-EM4-tomography2.pptx: Tomography II powerpoint

* paper for discussion nov 8

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle Lecture II JFrank" date="1351203522" name="Single_Particle_lecture_II-20121016_1957-1.arf" path="Single_Particle_lecture_II-20121016_1957-1.arf" size="267146814" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="video of electron tomography lecture 1" date="1348868808" name="Electron_Tomography_1-20120925_2010-1.arf" path="Electron_Tomography_1-20120925_2010-1.arf" size="201965622" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion nov 8" date="1351782576" name="isac.pdf" path="isac.pdf" size="1075641" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Helical_Reconstruction_Lecture" date="1353453006" name="Helical3d_reconst_v3.pdf" path="Helical3d_reconst_v3.pdf" size="5095698" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="lecture on Fourier transforms" date="1348007575" name="lecture-sept18_2012.pptx" path="lecture-sept18_2012.pptx" size="14599919" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="recording of FFT lecture" date="1348495965" name="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" path="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" size="17907486" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture I" date="1349812674" name="NYSBC_2010_1.ppt" path="NYSBC_2010_1.ppt" size="15920128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Problem Set #1" date="1347998960" name="ProblemSet1_2012.doc" path="ProblemSet1_2012.doc" size="45568" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Mac" date="1347999281" name="webexnbrplayer_intel.dmg" path="webexnbrplayer_intel.dmg" size="7772598" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 2001 Nov 2012 - Main.BillRice

META TOPICPARENT	name="CemCourseGroup"

Contents

Added:

>
>

Nov 8 2D Crystallography I - Iban Ubarretxena

Paper for discussion Nov 8 isac.pdf

Nov 5 - Nov 9 Practicals rescheduled from week of Oct 26

Nov 5 RCT I 10am-1 pm
Nov 6 RCT II/ Commonlines 1 pm-4 pm
Nov 7 Reference based 10 am-1 pm
Nov 8 finish single particle 1pm - 4pm
Nov 9 IMOD 10 am- 1 pm

Oct 23 - Single Particle III - Joachim Frank

Lecture
- NYSBC_2010-3.ppt: single particle lecture iii slides
- Single_Particle_III-20121023_2006-1.arf: Single Particle JFrank Lecture 3

Oct 16 - Single Particle II - Joachim Frank

Lecture
- NYSBC_2012-2.ppt: single particle lecture ii slides
- Single_Particle_lecture_II-20121016_1957-1.arf: Single Particle JFrank Lecture 2

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I
- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1
- Paper for discussion next week (Oct 18)
- random conical tilt
Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012

* NYSBC-EM4-tomography2.pptx: Tomography II powerpoint

Added:

>
>

* paper for discussion nov 8

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Homework for Fourier lecture" date="1348007165" name="Homework_sept_18.docx" path="Homework_sept_18.docx" size="17649" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Recording of Lecture" date="1347999045" name="CEM_course_lecture_1-20120911_2012-1.arf" path="CEM_course_lecture_1-20120911_2012-1.arf" size="100034041" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle Lecture II JFrank" date="1351203522" name="Single_Particle_lecture_II-20121016_1957-1.arf" path="Single_Particle_lecture_II-20121016_1957-1.arf" size="267146814" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="video of electron tomography lecture 1" date="1348868808" name="Electron_Tomography_1-20120925_2010-1.arf" path="Electron_Tomography_1-20120925_2010-1.arf" size="201965622" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion nov 8" date="1351782576" name="isac.pdf" path="isac.pdf" size="1075641" user="Main.BillRice" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Helical_Reconstruction_Lecture" date="1353453006" name="Helical3d_reconst_v3.pdf" path="Helical3d_reconst_v3.pdf" size="5095698" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="lecture on Fourier transforms" date="1348007575" name="lecture-sept18_2012.pptx" path="lecture-sept18_2012.pptx" size="14599919" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="recording of FFT lecture" date="1348495965" name="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" path="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" size="17907486" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture I" date="1349812674" name="NYSBC_2010_1.ppt" path="NYSBC_2010_1.ppt" size="15920128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Problem Set #1" date="1347998960" name="ProblemSet1_2012.doc" path="ProblemSet1_2012.doc" size="45568" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Mac" date="1347999281" name="webexnbrplayer_intel.dmg" path="webexnbrplayer_intel.dmg" size="7772598" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 1925 Oct 2012 - Main.MarienaSilvestry

META TOPICPARENT	name="CemCourseGroup"

Contents

Oct 23 - Single Particle III - Joachim Frank

Oct 23 - Single Particle III - Joachim Frank

Lecture
- NYSBC_2010-3.ppt: single particle lecture iii slides

Added:

>
>

- Single_Particle_III-20121023_2006-1.arf: Single Particle JFrank Lecture 3

Oct 16 - Single Particle II - Joachim Frank

Lecture
- NYSBC_2012-2.ppt: single particle lecture ii slides

Added:

>
>

- Single_Particle_lecture_II-20121016_1957-1.arf: Single Particle JFrank Lecture 2

Deleted:

<
<

d19 2

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I
- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1

Changed:

<
<

* Paper for discussion next week (Oct 18)

>
>

- Paper for discussion next week (Oct 18)

Deleted:

<
<

- Cem_course_single_particle_I-20121009_2003-1.arf: JFrank's first lecture on single particle EM
Paper for discussion next week (Oct 18)

- random conical tilt
Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012

* NYSBC-EM4-tomography2.pptx: Tomography II powerpoint

Deleted:

<
<

* d90 1

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Homework for Fourier lecture" date="1348007165" name="Homework_sept_18.docx" path="Homework_sept_18.docx" size="17649" user="Main.BillRice" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle Lecture II JFrank" date="1351203522" name="Single_Particle_lecture_II-20121016_1957-1.arf" path="Single_Particle_lecture_II-20121016_1957-1.arf" size="267146814" user="Main.MarienaSilvestry" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="video of electron tomography lecture 1" date="1348868808" name="Electron_Tomography_1-20120925_2010-1.arf" path="Electron_Tomography_1-20120925_2010-1.arf" size="201965622" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Helical_Reconstruction_Lecture" date="1353453006" name="Helical3d_reconst_v3.pdf" path="Helical3d_reconst_v3.pdf" size="5095698" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="lecture on Fourier transforms" date="1348007575" name="lecture-sept18_2012.pptx" path="lecture-sept18_2012.pptx" size="14599919" user="Main.BillRice" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Problem Set #1" date="1347998960" name="ProblemSet1_2012.doc" path="ProblemSet1_2012.doc" size="45568" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Mac" date="1347999281" name="webexnbrplayer_intel.dmg" path="webexnbrplayer_intel.dmg" size="7772598" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 1825 Oct 2012 - Main.BillRice

META TOPICPARENT	name="CemCourseGroup"

Contents

Added:

>
>

Oct 23 - Single Particle III - Joachim Frank

Lecture
- NYSBC_2010-3.ppt: single particle lecture iii slides

Oct 16 - Single Particle II - Joachim Frank

Lecture
- NYSBC_2012-2.ppt: single particle lecture ii slides

d19 2

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I
- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1 * Paper for discussion next week (Oct 18)
- Cem_course_single_particle_I-20121009_2003-1.arf: JFrank's first lecture on single particle EM
Paper for discussion next week (Oct 18)
- random conical tilt
Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012

* NYSBC-EM4-tomography2.pptx: Tomography II powerpoint

Added:

>
>

Added:

>
>

d90 1

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="Homework for Fourier lecture" date="1348007165" name="Homework_sept_18.docx" path="Homework_sept_18.docx" size="17649" user="Main.BillRice" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="Recording of Lecture" date="1347999045" name="CEM_course_lecture_1-20120911_2012-1.arf" path="CEM_course_lecture_1-20120911_2012-1.arf" size="100034041" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="video of electron tomography lecture 1" date="1348868808" name="Electron_Tomography_1-20120925_2010-1.arf" path="Electron_Tomography_1-20120925_2010-1.arf" size="201965622" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Helical_Reconstruction_Lecture" date="1353453006" name="Helical3d_reconst_v3.pdf" path="Helical3d_reconst_v3.pdf" size="5095698" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="lecture on Fourier transforms" date="1348007575" name="lecture-sept18_2012.pptx" path="lecture-sept18_2012.pptx" size="14599919" user="Main.BillRice" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
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META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture I" date="1349812674" name="NYSBC_2010_1.ppt" path="NYSBC_2010_1.ppt" size="15920128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Problem Set #1" date="1347998960" name="ProblemSet1_2012.doc" path="ProblemSet1_2012.doc" size="45568" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Mac" date="1347999281" name="webexnbrplayer_intel.dmg" path="webexnbrplayer_intel.dmg" size="7772598" user="Main.DavidStokes" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 1716 Oct 2012 - Main.BillRice

META TOPICPARENT	name="CemCourseGroup"

Contents

Oct 9 -Single Particle I - Joachim Frank

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I
- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1 * Paper for discussion next week (Oct 18)
- Cem_course_single_particle_I-20121009_2003-1.arf: JFrank's first lecture on single particle EM

Changed:

<
<

>
>

Paper for discussion next week (Oct 18)

Added:

>
>

- random conical tilt

Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012

* NYSBC-EM4-tomography2.pptx: Tomography II powerpoint

Added:

>
>

* d90 1

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Recording of Lecture" date="1347999045" name="CEM_course_lecture_1-20120911_2012-1.arf" path="CEM_course_lecture_1-20120911_2012-1.arf" size="100034041" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="video of electron tomography lecture 1" date="1348868808" name="Electron_Tomography_1-20120925_2010-1.arf" path="Electron_Tomography_1-20120925_2010-1.arf" size="201965622" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Helical_Reconstruction_Lecture" date="1353453006" name="Helical3d_reconst_v3.pdf" path="Helical3d_reconst_v3.pdf" size="5095698" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="recording of FFT lecture" date="1348495965" name="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" path="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" size="17907486" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture I" date="1349812674" name="NYSBC_2010_1.ppt" path="NYSBC_2010_1.ppt" size="15920128" user="Main.BillRice" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Problem Set #1" date="1347998960" name="ProblemSet1_2012.doc" path="ProblemSet1_2012.doc" size="45568" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Mac" date="1347999281" name="webexnbrplayer_intel.dmg" path="webexnbrplayer_intel.dmg" size="7772598" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 1612 Oct 2012 - Main.BillRice

META TOPICPARENT	name="CemCourseGroup"

Contents

Oct 9 -Single Particle I - Joachim Frank

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I
- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1

Changed:

<
<

>
>

* Paper for discussion next week (Oct 18)

Added:

>
>

- Cem_course_single_particle_I-20121009_2003-1.arf: JFrank's first lecture on single particle EM

Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012

Added:

>
>

* NYSBC-EM4-tomography2.pptx: Tomography II powerpoint

* d90 1

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Recording of Lecture" date="1347999045" name="CEM_course_lecture_1-20120911_2012-1.arf" path="CEM_course_lecture_1-20120911_2012-1.arf" size="100034041" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="video of electron tomography lecture 1" date="1348868808" name="Electron_Tomography_1-20120925_2010-1.arf" path="Electron_Tomography_1-20120925_2010-1.arf" size="201965622" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="Helical_Reconstruction_Lecture" date="1353453006" name="Helical3d_reconst_v3.pdf" path="Helical3d_reconst_v3.pdf" size="5095698" user="Main.MarienaSilvestry" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="recording of FFT lecture" date="1348495965" name="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" path="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" size="17907486" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"

Changed:

<
<

META FILEATTACHMENT	attachment="NYSBC-EM4-tomography2.pptx" attr="" comment="Tomography II powerpoint" date="1350049143" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" stream="NYSBC-EM4-tomography2.pptx" user="Main.DavidStokes" version="1"

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="Problem Set #1" date="1347998960" name="ProblemSet1_2012.doc" path="ProblemSet1_2012.doc" size="45568" user="Main.DavidStokes" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Mac" date="1347999281" name="webexnbrplayer_intel.dmg" path="webexnbrplayer_intel.dmg" size="7772598" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 1512 Oct 2012 - Main.DavidStokes

META TOPICPARENT	name="CemCourseGroup"

Contents

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I
- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1

Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012

Added:

>
>

* d90 1

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Recording of Lecture" date="1347999045" name="CEM_course_lecture_1-20120911_2012-1.arf" path="CEM_course_lecture_1-20120911_2012-1.arf" size="100034041" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="video of electron tomography lecture 1" date="1348868808" name="Electron_Tomography_1-20120925_2010-1.arf" path="Electron_Tomography_1-20120925_2010-1.arf" size="201965622" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="recording of FFT lecture" date="1348495965" name="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" path="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" size="17907486" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"

Added:

>
>

META FILEATTACHMENT	attachment="NYSBC-EM4-tomography2.pptx" attr="" comment="Tomography II powerpoint" date="1350049143" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" stream="NYSBC-EM4-tomography2.pptx" user="Main.DavidStokes" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Mac" date="1347999281" name="webexnbrplayer_intel.dmg" path="webexnbrplayer_intel.dmg" size="7772598" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 1410 Oct 2012 - Main.MarienaSilvestry

META TOPICPARENT	name="CemCourseGroup"

Contents

Oct 9 -Single Particle I - Joachim Frank

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I

Changed:

<
<

a65 1

>
>

- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1

Added:

>
>

Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012 * d90 1

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Recording of Lecture" date="1347999045" name="CEM_course_lecture_1-20120911_2012-1.arf" path="CEM_course_lecture_1-20120911_2012-1.arf" size="100034041" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="video of electron tomography lecture 1" date="1348868808" name="Electron_Tomography_1-20120925_2010-1.arf" path="Electron_Tomography_1-20120925_2010-1.arf" size="201965622" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="recording of FFT lecture" date="1348495965" name="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" path="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" size="17907486" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Mac" date="1347999281" name="webexnbrplayer_intel.dmg" path="webexnbrplayer_intel.dmg" size="7772598" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 1309 Oct 2012 - Main.BillRice

META TOPICPARENT	name="CemCourseGroup"

Contents

Added:

>
>

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I

a65 1

Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)

Added:

>
>

- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

Added:

>
>

-- DavidStokes - 10 Sep 2012 * d90 1

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Recording of Lecture" date="1347999045" name="CEM_course_lecture_1-20120911_2012-1.arf" path="CEM_course_lecture_1-20120911_2012-1.arf" size="100034041" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="video of electron tomography lecture 1" date="1348868808" name="Electron_Tomography_1-20120925_2010-1.arf" path="Electron_Tomography_1-20120925_2010-1.arf" size="201965622" user="Main.BillRice" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="recording of FFT lecture" date="1348495965" name="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" path="FT,_CTF,_Cross_Correlation-20120918_2002-1.arf" size="17907486" user="Main.BillRice" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Mac" date="1347999281" name="webexnbrplayer_intel.dmg" path="webexnbrplayer_intel.dmg" size="7772598" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 1204 Oct 2012 - Main.MarienaSilvestry

META TOPICPARENT	name="CemCourseGroup"

Contents

Answers to last week's homework

Changed:

<
<

Lecture

>
>

- homework_tomography_answers.ppt: answers to tomography homework

Added:

>
>

Oct 2 - Tomography II - David Stokes

Lecture

- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)
Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Changed:

<
<

-- DavidStokes - 10 Sep 2012

>
>

Set ALLOWTOPICVIEW =

Deleted:

<
<

d67 1

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Recording of Lecture" date="1347999045" name="CEM_course_lecture_1-20120911_2012-1.arf" path="CEM_course_lecture_1-20120911_2012-1.arf" size="100034041" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"

Deleted:

<
<

META FILEATTACHMENT	attachment="homework_tomography.doc" attr="" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" stream="homework_tomography.doc" user="Main.BillRice" version="2"

META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="WebEx Player for Mac" date="1347999281" name="webexnbrplayer_intel.dmg" path="webexnbrplayer_intel.dmg" size="7772598" user="Main.DavidStokes" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 1102 Oct 2012 - Main.BillRice

META TOPICPARENT	name="CemCourseGroup"

Contents

Answers to last week's homework
Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)
Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

-- DavidStokes - 10 Sep 2012

d67 1

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"

Changed:

<
<

META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349128843" name="homework_tomography.doc" path="homework_tomography.doc" size="14336" user="Main.BillRice" version="1"

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="Intro & Optics Lecture" date="1347996905" name="NYSBC-EM1-intro-optics12.ppt" path="NYSBC-EM1-intro-optics12.ppt" size="38914560" user="Main.DavidStokes" version="1"

META FILEATTACHMENT	attachment="homework_tomography.doc" attr="" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" stream="homework_tomography.doc" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
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META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 1001 Oct 2012 - Main.BillRice

META TOPICPARENT	name="CemCourseGroup"

Contents

Added:

>
>

Answers to last week's homework
Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2

Homework (please hand in Oct 11)
Paper for Discussion next week (Oct 11)

- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

-- DavidStokes - 10 Sep 2012

Added:

>
>

d67 1

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Recording of Lecture" date="1347999045" name="CEM_course_lecture_1-20120911_2012-1.arf" path="CEM_course_lecture_1-20120911_2012-1.arf" size="100034041" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"

Added:

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META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349128843" name="homework_tomography.doc" path="homework_tomography.doc" size="14336" user="Main.BillRice" version="1"

META FILEATTACHMENT	attachment="homework_tomography.doc" attr="" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" stream="homework_tomography.doc" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
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META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 929 Sep 2012 - Main.BillRice

META TOPICPARENT	name="CemCourseGroup"

Contents

- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Added:

>
>

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

-- DavidStokes - 10 Sep 2012

Changed:

<
<

* Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Recording of Lecture" date="1347999045" name="CEM_course_lecture_1-20120911_2012-1.arf" path="CEM_course_lecture_1-20120911_2012-1.arf" size="100034041" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"

Added:

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META FILEATTACHMENT	attr="" autoattached="1" comment="JFrank's first lecture on single particle EM" date="1349890168" name="Cem_course_single_particle_I-20121009_2003-1.arf" path="Cem_course_single_particle_I-20121009_2003-1.arf" size="232910681" user="Main.MarienaSilvestry" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attachment="homework_tomography.doc" attr="" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" stream="homework_tomography.doc" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"

Deleted:

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META FILEATTACHMENT	attachment="Electron_Tomography_1-20120925_2010-1.arf" attr="" comment="video of electron tomography lecture 1" date="1348868807" name="Electron_Tomography_1-20120925_2010-1.arf" path="Electron Tomography 1-20120925 2010-1.arf" size="201965622" stream="Electron Tomography 1-20120925 2010-1.arf" user="Main.BillRice" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 828 Sep 2012 - Main.BillRice

META TOPICPARENT	name="CemCourseGroup"

Contents

- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

-- DavidStokes - 10 Sep 2012

Added:

>
>

* Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Recording of Lecture" date="1347999045" name="CEM_course_lecture_1-20120911_2012-1.arf" path="CEM_course_lecture_1-20120911_2012-1.arf" size="100034041" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attachment="homework_tomography.doc" attr="" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" stream="homework_tomography.doc" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"

Added:

>
>

META FILEATTACHMENT	attachment="Electron_Tomography_1-20120925_2010-1.arf" attr="" comment="video of electron tomography lecture 1" date="1348868807" name="Electron_Tomography_1-20120925_2010-1.arf" path="Electron Tomography 1-20120925 2010-1.arf" size="201965622" stream="Electron Tomography 1-20120925 2010-1.arf" user="Main.BillRice" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 727 Sep 2012 - Main.BillRice

META TOPICPARENT	name="CemCourseGroup"

Contents

Sept 18 - Fourier Transforms - Bill Rice

- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms

Changed:

<
<

d61 2

>
>

Homework

- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

-- DavidStokes - 10 Sep 2012

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Recording of Lecture" date="1347999045" name="CEM_course_lecture_1-20120911_2012-1.arf" path="CEM_course_lecture_1-20120911_2012-1.arf" size="100034041" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="paper for discussion Oct 11" date="1349812300" name="J_Cell_Biol-2009-Heuser-921-33.pdf" path="J_Cell_Biol-2009-Heuser-921-33.pdf" size="4572818" user="Main.BillRice" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attachment="homework_tomography.doc" attr="" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" stream="homework_tomography.doc" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 627 Sep 2012 - Main.BillRice

META TOPICPARENT	name="CemCourseGroup"

Contents

- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1

Added:

>
>

- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms

d61 2

- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

-- DavidStokes - 10 Sep 2012

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="Recording of Lecture" date="1347999045" name="CEM_course_lecture_1-20120911_2012-1.arf" path="CEM_course_lecture_1-20120911_2012-1.arf" size="100034041" user="Main.DavidStokes" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attachment="homework_tomography.doc" attr="" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" stream="homework_tomography.doc" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 526 Sep 2012 - Main.DavidStokes

META TOPICPARENT	name="CemCourseGroup"

Contents

Added:

>
>

- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell

- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms

d61 2

- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

-- DavidStokes - 10 Sep 2012

Added:

>
>

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attachment="homework_tomography.doc" attr="" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" stream="homework_tomography.doc" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 424 Sep 2012 - Main.BillRice

META TOPICPARENT	name="CemCourseGroup"

Contents

- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Changed:

<
<

- lecture-sept18_2012.pptx: lecture on Fourier transforms

>
>

Sept 18 - Fourier Transforms - Bill Rice

Added:

>
>

Lecture

- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms

d61 2

- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

-- DavidStokes - 10 Sep 2012

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="tomography paper for discussion Oct 4" date="1348767917" name="zampighi-2008-JNeuroscience-active-zone.pdf" path="zampighi-2008-JNeuroscience-active-zone.pdf" size="501823" user="Main.BillRice" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attachment="homework_tomography.doc" attr="" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" stream="homework_tomography.doc" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 318 Sep 2012 - Main.BillRice

META TOPICPARENT	name="CemCourseGroup"

Contents

- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Added:

>
>

- lecture-sept18_2012.pptx: lecture on Fourier transforms
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms

d61 2

Deleted:

<
<

d35 2

- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

-- DavidStokes - 10 Sep 2012

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="course logistics" date="1347313035" name="CryoEM-Course-logistics.doc" path="CryoEM-Course-logistics.doc" size="44544" user="Main.DavidStokes" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"

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META FILEATTACHMENT	attr="" autoattached="1" comment="Single Particle JFrank Lecture 3" date="1351202703" name="Single_Particle_III-20121023_2006-1.arf" path="Single_Particle_III-20121023_2006-1.arf" size="233513545" user="Main.MarienaSilvestry" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attachment="homework_tomography.doc" attr="" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" stream="homework_tomography.doc" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 218 Sep 2012 - Main.DavidStokes

META TOPICPARENT	name="CemCourseGroup"

Contents

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- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

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- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

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Sept 11 - Introduction and Optics - David Stokes

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Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture

Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics

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>
>

- questionnaire.doc
- CryoEM-Course-logistics.doc

- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

-- DavidStokes - 10 Sep 2012

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>
>

Added:

>
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META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography I powerpoint" date="1348689702" name="NYSBC-EM3-tomographyI.pptx" path="NYSBC-EM3-tomographyI.pptx" size="28851009" user="Main.DavidStokes" version="1"

META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"

Added:

>
>

META FILEATTACHMENT	attr="" autoattached="1" comment="" date="1348797398" name="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" path="Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf" size="316286" user="Main.BillRice" version="1"
META FILEATTACHMENT	attachment="homework_tomography.doc" attr="" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" stream="homework_tomography.doc" user="Main.BillRice" version="2"

META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

Revision 110 Sep 2012 - Main.DavidStokes

META TOPICPARENT	name="CemCourseGroup"

Contents

- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

d25 2

Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

-- DavidStokes - 10 Sep 2012

META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture ii slides" date="1351201515" name="NYSBC_2012-2.ppt" path="NYSBC_2012-2.ppt" size="8389120" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Discussion paper for Oct 18" date="1350076690" name="radermacher1992-1.pdf" path="radermacher1992-1.pdf" size="1864658" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="homework questions for tomography" date="1349187939" name="homework_tomography.doc" path="homework_tomography.doc" size="14848" user="Main.BillRice" version="2"
META FILEATTACHMENT	attr="" autoattached="1" comment="single particle lecture iii slides" date="1351201594" name="NYSBC_2010-3.ppt" path="NYSBC_2010-3.ppt" size="22959616" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="2DX Lecture 1" date="1352404497" name="2d_crystallography_I-20121106_2104-1.arf" path="2d_crystallography_I-20121106_2104-1.arf" size="267239407" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="questionaire" date="1347313014" name="questionnaire.doc" path="questionnaire.doc" size="28672" user="Main.DavidStokes" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="answers to tomography homework" date="1350363551" name="homework_tomography_answers.ppt" path="homework_tomography_answers.ppt" size="880128" user="Main.BillRice" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography Lecture Part II" date="1349374139" name="Tomography_2-20121002_2004-2.arf" path="Tomography_2-20121002_2004-2.arf" size="285717719" user="Main.MarienaSilvestry" version="1"
META FILEATTACHMENT	attr="" autoattached="1" comment="Tomography II powerpoint" date="1350049144" name="NYSBC-EM4-tomography2.pptx" path="NYSBC-EM4-tomography2.pptx" size="50915112" user="Main.DavidStokes" version="1"

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