Difference: CemCourseMaterials12 (27 vs. 28)

Revision 2817 Sep 2013 - Main.DavidStokes

META TOPICPARENT	name="CemCourseGroup"

Contents

Dec 4 - Molecular Fitting - Willy Wriggers

NYSBC12.ppt: Molecular fitting lecture Wriggers 2012
Molecular_Fitting-20121204_2102-1.arf: Molecular fitting recording Wriggers 2012

Nov 26 - Nov 30 Practicals rescheduled from week of Oct 26

Nov 26 RCT I 10am-1 pm
Nov 27 RCT II/ Commonlines 10am-1 pm
Nov 28 Reference based 10 am-1 pm
Nov 29 finish single particle 10am-1 pm
Nov 30 IMOD 10 am- 1 pm

Nov 20 - Helical Reconstruction - Hernando Sosa

Helical3d_reconst_v3.pdf: Helical Reconstruction Lecture
- Helical_Processing-20121120_2113-1.arf: Helical Reconstruction recording

Nov 13 2D Crystallography II - Iban Ubarretxena

gonenetal.pdf: paper for discussion nov 15
Lecture
- Iban2DX_Lecture_2-20121113_2101-1.arf: Second 2dx lecture

Nov 6 2D Crystallography I - Iban Ubarretxena

Paper for discussion Nov 8 isac.pdf
Lecture
- 2d_crystallography_I-20121106_2104-1.arf: 2DX Lecture 1

Oct 23 - Single Particle III - Joachim Frank

Lecture
- NYSBC_2010-3.ppt: single particle lecture iii slides
- Single_Particle_III-20121023_2006-1.arf: Single Particle JFrank Lecture 3

Oct 16 - Single Particle II - Joachim Frank

Lecture
- NYSBC_2012-2.ppt: single particle lecture ii slides
- Single_Particle_lecture_II-20121016_1957-1.arf: Single Particle JFrank Lecture 2

Oct 9 -Single Particle I - Joachim Frank

Lecture
- NYSBC_2010_1.ppt: single particle lecture I
- Cem_course_single_particle_I-20121009_2003-1.arf: Single Particle JFrank Lecture 1
- Paper for discussion next week (Oct 18)
- random conical tilt
Answers to last week's homework
- homework_tomography_answers.ppt: answers to tomography homework

Oct 2 - Tomography II - David Stokes

Lecture
- Tomography_2-20121002_2004-2.arf: video of electron tomography lecture part 2
- NYSBC-EM4-tomography2.pptx: Tomography II powerpoint

Homework (please hand in Oct 11)
- homework_tomography.doc

Paper for Discussion next week (Oct 11)
- J_Cell_Biol-2009-Heuser-921-33.pdf: paper for discussion Oct 11

Sept 25 - Tomography I = David Stokes

Lecture
- Electron_Tomography_1-20120925_2010-1.arf: video of electron tomography lecture 1
- NYSBC-EM3-tomographyI.pptx: Tomography I powerpoint

Paper for discussion next week (Oct 4)
- zampighi-2008-JNeuroscience-active-zone.pdf: tomography paper for discussion Oct 4
Recommended reading
- Electron tomography, 2nd edition (2007) J. Frank ed. Springer, New York.
- Zampighi et al (2008) J. Neurosc. 28:4151-4160 neuro synapse
- Lucic et al. (2005) Ann. Rev. Biochem. 74:833
- McIntosh^? et al. (2005) Trends Cell Biol. 15:43
- Marsh et al. (2001) PNAS USA 98:2399 visual cell
- Mannella (2006) Biochim Bioph Acta 1763:542 mitochondria

Sept 18 - Fourier Transforms - Bill Rice

Lecture
- FT,_CTF,_Cross_Correlation-20120918_2002-1.arf: recording of FFT lecture
- lecture-sept18_2012.pptx: powerpoint lecture on Fourier transforms
Homework
- Homework_sept_18.docx: Homework for Fourier lecture (please hand in Sept. 27)
- Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf: Answers_to_Homework_of_Fourier_Series_and_Transforms.pdf

Sept 11 - Introduction and Optics - David Stokes

Lecture
- NYSBC-EM1-intro-optics12.ppt: Intro & Optics Lecture
- CEM_course_lecture_1-20120911_2012-1.arf: Recording of Lecture
Homework
- ProblemSet1_2012.doc: Problem Set #1
Readings
- Hoffman(1997)_An_Introduction_to_Fourier_Theory.pdf: Hoffman Introduction to Fourier Theory
- fourier_intro_Shatkay.pdf: Shatkay Fourier Theory Intro
- http://www.med.harvard.edu/JPNM/physics/didactics/improc/intro/fourier1.html

Course Logistics
- questionnaire.doc
- CryoEM-Course-logistics.doc
- webexnbrplayer_intel.dmg: WebEx Player for Mac (to view lecture recordings)
- nbr2player.msi: WebEx Player for Windows (to view lecture recordings)

Set ALLOWTOPICVIEW =

-- DavidStokes - 10 Sep 2012

Deleted:

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* paper for discussion nov 8

* Molecular_Fitting-20121204_2102-1.arf: Molecular fitting recording Wriggers 2012

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