Difference: CemCoursePaperTopics13 (1 vs. 14)

Revision 1427 Dec 2013 - Main.DavidStokes

 
META TOPICPARENT name="CemCourseGroup"
Final papers are due on Dec 20. Send pdf to stokes@nyu.edu

  • Your paper should be about 5 pages of text for the body.
  • Figures should be included to illustrate the structures and mechanisms discussed in the paper.
  • References should be cited within the body of the text and a bibliography included at the end. References and Figures are not included in the 5-page limit.

  • Your Final Paper should be based on several publications related to the general topics listed below.
Added:
>
>
  • These topics have been chosen because they have been rich for EM analysis. It is up to you to find out why.
 
  • Papers should include background material setting the context for the topic. A review of relevant literature.
  • Papers should include some discussion of the technical EM methods that have advanced the field.
  • A critical view of the results and conclusions of the literature is encouraged.
  • End with some conclusions/recommendations/future directions. The topics are pretty diverse, so no one template will work for everyone.
  • Please do not choose a topic closely related to the research in your own laboratory. Use this as an opportunity to learn about a new topic.
  • Good luck.

Sign up for Paper Topics in the table below:

  • Go to the bottom of this page.
  • Hit the "Edit" link.
  • Enter your name in between the first set of vertical bars (| |) as in the first example.
  • Hit "Preview Changes" button
  • You may use the "go back" button of your web browser to fix problems
  • "Hit "Save Changes" at the bottom of the preview page to finalize the signup

  • Only one person per topic, unless they all get used up.
  • If you are denied access, it may be because someone else is accessing the page. Try again a little later (or email stokes@nyu.edu)

name topic type of paper
example name "example topic"
  "Effect of specimen temperature on radiation damage" tech
  "Denoising and segmentation of tomographic reconstructions" tech
  "Advantages of the spot scan imaging mode" tech
  "Validation of single particle reconstructions" tech
  "3D reconstruction of HIV envelope glycoprotein tomo
Wesley Chao "Electron tomography of intact cells tomo
  "3D reconstruction of insect flight muscle" tomo
  "Structure of Microtubules in vivo" tomo
  "Atomic structures of icosahedral viruses" SPA
  "Structure of the nuclear pore complex" SPA
Thomas Hsiao "Structure of the proteasome" SPA
Yudong Hao "EF-G-mediated translocation as seen by cryo-electron microscopy" SPA
  "Structure of GroEL" SPA
Alexis Jaramillo "Structure of the nicotinic acetylcholine receptor" helical
  "Structure of Tubulin & Microtubules" helical
Kenneth McGuinness "Atomic models describing the interactions of myosin with actin filaments" helical
  "Atomic models describing the interactions kinesins with microtubules" helical
  "Structure of the bacterial flagella" helical
David Hernandez "Structure of bacteriorhodopsin" 2DX
Katie Feher "Structure of aquaporin" 2DX

tech = technical
tomo = tomography
SPA = single particle analysis
helical = helical reconstruction
2DX = 2D crystallography

  • Set ALLOWTOPICVIEW =

-- DavidStokes - 07 Aug 2013

Deleted:
<
<

Revision 1327 Dec 2013 - Main.DavidStokes

 
META TOPICPARENT name="CemCourseGroup"
Final papers are due on Dec 20. Send pdf to stokes@nyu.edu
Changed:
<
<
  • Papers should be about 5 pages of text for the body.
  • Figures should be included to illustrate the structures and mechanisms discussed in the paper. References should be cited within the body of the text and a bibliography included at the end. References and Figures are not included in the 5-page limit.
>
>
  • Your paper should be about 5 pages of text for the body.
  • Figures should be included to illustrate the structures and mechanisms discussed in the paper.
Added:
>
>
  • References should be cited within the body of the text and a bibliography included at the end. References and Figures are not included in the 5-page limit.

  • Your Final Paper should be based on several publications related to the general topics listed below.
 
  • Papers should include background material setting the context for the topic. A review of relevant literature.
  • Papers should include some discussion of the technical EM methods that have advanced the field.
  • A critical view of the results and conclusions of the literature is encouraged.
  • End with some conclusions/recommendations/future directions. The topics are pretty diverse, so no one template will work for everyone.
  • Please do not choose a topic closely related to the research in your own laboratory. Use this as an opportunity to learn about a new topic.
  • Good luck.

Sign up for Paper Topics in the table below:

  • Go to the bottom of this page.
  • Hit the "Edit" link.
  • Enter your name in between the first set of vertical bars (| |) as in the first example.
  • Hit "Preview Changes" button
  • You may use the "go back" button of your web browser to fix problems
  • "Hit "Save Changes" at the bottom of the preview page to finalize the signup

  • Only one person per topic, unless they all get used up.
  • If you are denied access, it may be because someone else is accessing the page. Try again a little later (or email stokes@nyu.edu)

name topic type of paper
example name "example topic"
  "Effect of specimen temperature on radiation damage" tech
  "Denoising and segmentation of tomographic reconstructions" tech
  "Advantages of the spot scan imaging mode" tech
  "Validation of single particle reconstructions" tech
  "3D reconstruction of HIV envelope glycoprotein tomo
Wesley Chao "Electron tomography of intact cells tomo
  "3D reconstruction of insect flight muscle" tomo
  "Structure of Microtubules in vivo" tomo
Added:
>
>
  "Atomic structures of icosahedral viruses" SPA
 
  "Structure of the nuclear pore complex" SPA
Thomas Hsiao "Structure of the proteasome" SPA
Yudong Hao "EF-G-mediated translocation as seen by cryo-electron microscopy" SPA
  "Structure of GroEL" SPA
Alexis Jaramillo "Structure of the nicotinic acetylcholine receptor" helical
  "Structure of Tubulin & Microtubules" helical
Kenneth McGuinness "Atomic models describing the interactions of myosin with actin filaments" helical
  "Atomic models describing the interactions kinesins with microtubules" helical
  "Structure of the bacterial flagella" helical
David Hernandez "Structure of bacteriorhodopsin" 2DX
Katie Feher "Structure of aquaporin" 2DX

tech = technical
tomo = tomography
SPA = single particle analysis
helical = helical reconstruction
2DX = 2D crystallography

  • Set ALLOWTOPICVIEW =

-- DavidStokes - 07 Aug 2013

Added:
>
>

Revision 1218 Dec 2013 - Main.YudongHao

 
META TOPICPARENT name="CemCourseGroup"
Final papers are due on Dec 20. Send pdf to stokes@nyu.edu

  • Papers should be about 5 pages of text for the body.
  • Figures should be included to illustrate the structures and mechanisms discussed in the paper. References should be cited within the body of the text and a bibliography included at the end. References and Figures are not included in the 5-page limit.
  • Papers should include background material setting the context for the topic. A review of relevant literature.
  • Papers should include some discussion of the technical EM methods that have advanced the field.
  • A critical view of the results and conclusions of the literature is encouraged.
  • End with some conclusions/recommendations/future directions. The topics are pretty diverse, so no one template will work for everyone.
  • Please do not choose a topic closely related to the research in your own laboratory. Use this as an opportunity to learn about a new topic.
  • Good luck.

Sign up for Paper Topics in the table below:

  • Go to the bottom of this page.
  • Hit the "Edit" link.
  • Enter your name in between the first set of vertical bars (| |) as in the first example.
  • Hit "Preview Changes" button
  • You may use the "go back" button of your web browser to fix problems
  • "Hit "Save Changes" at the bottom of the preview page to finalize the signup

  • Only one person per topic, unless they all get used up.
  • If you are denied access, it may be because someone else is accessing the page. Try again a little later (or email stokes@nyu.edu)

name topic type of paper
example name "example topic"
  "Effect of specimen temperature on radiation damage" tech
  "Denoising and segmentation of tomographic reconstructions" tech
  "Advantages of the spot scan imaging mode" tech
  "Validation of single particle reconstructions" tech
  "3D reconstruction of HIV envelope glycoprotein tomo
Wesley Chao "Electron tomography of intact cells tomo
  "3D reconstruction of insect flight muscle" tomo
Changed:
<
<
Yudong Hao "Structure of Microtubules in vivo" tomo
>
>
  "Structure of Microtubules in vivo" tomo
 
  "Structure of the nuclear pore complex" SPA
Thomas Hsiao "Structure of the proteasome" SPA
Changed:
<
<
  "EF-G-mediated translocation as seen by cryo-electron microscopy" SPA
>
>
Yudong Hao "EF-G-mediated translocation as seen by cryo-electron microscopy" SPA
 
  "Structure of GroEL" SPA
Alexis Jaramillo "Structure of the nicotinic acetylcholine receptor" helical
  "Structure of Tubulin & Microtubules" helical
Kenneth McGuinness "Atomic models describing the interactions of myosin with actin filaments" helical
  "Atomic models describing the interactions kinesins with microtubules" helical
  "Structure of the bacterial flagella" helical
David Hernandez "Structure of bacteriorhodopsin" 2DX
Katie Feher "Structure of aquaporin" 2DX

tech = technical
tomo = tomography
SPA = single particle analysis
helical = helical reconstruction
2DX = 2D crystallography

  • Set ALLOWTOPICVIEW =

-- DavidStokes - 07 Aug 2013

Deleted:
<
<

Revision 1118 Dec 2013 - Main.YudongHao

 
META TOPICPARENT name="CemCourseGroup"
Final papers are due on Dec 20. Send pdf to stokes@nyu.edu

  • Papers should be about 5 pages of text for the body.
  • Figures should be included to illustrate the structures and mechanisms discussed in the paper. References should be cited within the body of the text and a bibliography included at the end. References and Figures are not included in the 5-page limit.
  • Papers should include background material setting the context for the topic. A review of relevant literature.
  • Papers should include some discussion of the technical EM methods that have advanced the field.
  • A critical view of the results and conclusions of the literature is encouraged.
  • End with some conclusions/recommendations/future directions. The topics are pretty diverse, so no one template will work for everyone.
  • Please do not choose a topic closely related to the research in your own laboratory. Use this as an opportunity to learn about a new topic.
  • Good luck.

Sign up for Paper Topics in the table below:

  • Go to the bottom of this page.
  • Hit the "Edit" link.
  • Enter your name in between the first set of vertical bars (| |) as in the first example.
  • Hit "Preview Changes" button
  • You may use the "go back" button of your web browser to fix problems
  • "Hit "Save Changes" at the bottom of the preview page to finalize the signup

  • Only one person per topic, unless they all get used up.
  • If you are denied access, it may be because someone else is accessing the page. Try again a little later (or email stokes@nyu.edu)

name topic type of paper
example name "example topic"
  "Effect of specimen temperature on radiation damage" tech
  "Denoising and segmentation of tomographic reconstructions" tech
  "Advantages of the spot scan imaging mode" tech
  "Validation of single particle reconstructions" tech
  "3D reconstruction of HIV envelope glycoprotein tomo
Wesley Chao "Electron tomography of intact cells tomo
  "3D reconstruction of insect flight muscle" tomo
Changed:
<
<
  "Structure of Microtubules in vivo" tomo
Yudong Hao "Structure of the nuclear pore complex" SPA
>
>
Yudong Hao "Structure of Microtubules in vivo" tomo
  "Structure of the nuclear pore complex" SPA
 
Thomas Hsiao "Structure of the proteasome" SPA
  "EF-G-mediated translocation as seen by cryo-electron microscopy" SPA
  "Structure of GroEL" SPA
Alexis Jaramillo "Structure of the nicotinic acetylcholine receptor" helical
  "Structure of Tubulin & Microtubules" helical
Kenneth McGuinness "Atomic models describing the interactions of myosin with actin filaments" helical
  "Atomic models describing the interactions kinesins with microtubules" helical
  "Structure of the bacterial flagella" helical
David Hernandez "Structure of bacteriorhodopsin" 2DX
Katie Feher "Structure of aquaporin" 2DX

tech = technical
tomo = tomography
SPA = single particle analysis
helical = helical reconstruction
2DX = 2D crystallography

  • Set ALLOWTOPICVIEW =

-- DavidStokes - 07 Aug 2013

Added:
>
>

Revision 1017 Dec 2013 - Main.KenMcGuinness

 
META TOPICPARENT name="CemCourseGroup"
Final papers are due on Dec 20. Send pdf to stokes@nyu.edu

  • Papers should be about 5 pages of text for the body.
  • Figures should be included to illustrate the structures and mechanisms discussed in the paper. References should be cited within the body of the text and a bibliography included at the end. References and Figures are not included in the 5-page limit.
  • Papers should include background material setting the context for the topic. A review of relevant literature.
  • Papers should include some discussion of the technical EM methods that have advanced the field.
  • A critical view of the results and conclusions of the literature is encouraged.
  • End with some conclusions/recommendations/future directions. The topics are pretty diverse, so no one template will work for everyone.
  • Please do not choose a topic closely related to the research in your own laboratory. Use this as an opportunity to learn about a new topic.
  • Good luck.

Sign up for Paper Topics in the table below:

  • Go to the bottom of this page.
  • Hit the "Edit" link.
  • Enter your name in between the first set of vertical bars (| |) as in the first example.
  • Hit "Preview Changes" button
  • You may use the "go back" button of your web browser to fix problems
  • "Hit "Save Changes" at the bottom of the preview page to finalize the signup

  • Only one person per topic, unless they all get used up.
  • If you are denied access, it may be because someone else is accessing the page. Try again a little later (or email stokes@nyu.edu)

name topic type of paper
example name "example topic"
  "Effect of specimen temperature on radiation damage" tech
  "Denoising and segmentation of tomographic reconstructions" tech
  "Advantages of the spot scan imaging mode" tech
  "Validation of single particle reconstructions" tech
  "3D reconstruction of HIV envelope glycoprotein tomo
Wesley Chao "Electron tomography of intact cells tomo
Changed:
<
<
Kenneth McGuinness "3D reconstruction of insect flight muscle" tomo
>
>
  "3D reconstruction of insect flight muscle" tomo
 
  "Structure of Microtubules in vivo" tomo
Yudong Hao "Structure of the nuclear pore complex" SPA
Thomas Hsiao "Structure of the proteasome" SPA
  "EF-G-mediated translocation as seen by cryo-electron microscopy" SPA
  "Structure of GroEL" SPA
Alexis Jaramillo "Structure of the nicotinic acetylcholine receptor" helical
  "Structure of Tubulin & Microtubules" helical
Changed:
<
<
  "Atomic models describing the interactions of myosin with actin filaments" helical
>
>
Kenneth McGuinness "Atomic models describing the interactions of myosin with actin filaments" helical
 
  "Atomic models describing the interactions kinesins with microtubules" helical
  "Structure of the bacterial flagella" helical
David Hernandez "Structure of bacteriorhodopsin" 2DX
Katie Feher "Structure of aquaporin" 2DX

tech = technical
tomo = tomography
SPA = single particle analysis
helical = helical reconstruction
2DX = 2D crystallography

  • Set ALLOWTOPICVIEW =

-- DavidStokes - 07 Aug 2013

Revision 913 Dec 2013 - Main.KenMcGuinness

 
META TOPICPARENT name="CemCourseGroup"
Final papers are due on Dec 20. Send pdf to stokes@nyu.edu

  • Papers should be about 5 pages of text for the body.
  • Figures should be included to illustrate the structures and mechanisms discussed in the paper. References should be cited within the body of the text and a bibliography included at the end. References and Figures are not included in the 5-page limit.
  • Papers should include background material setting the context for the topic. A review of relevant literature.
  • Papers should include some discussion of the technical EM methods that have advanced the field.
  • A critical view of the results and conclusions of the literature is encouraged.
  • End with some conclusions/recommendations/future directions. The topics are pretty diverse, so no one template will work for everyone.
  • Please do not choose a topic closely related to the research in your own laboratory. Use this as an opportunity to learn about a new topic.
  • Good luck.

Sign up for Paper Topics in the table below:

  • Go to the bottom of this page.
  • Hit the "Edit" link.
  • Enter your name in between the first set of vertical bars (| |) as in the first example.
  • Hit "Preview Changes" button
  • You may use the "go back" button of your web browser to fix problems
  • "Hit "Save Changes" at the bottom of the preview page to finalize the signup

  • Only one person per topic, unless they all get used up.
  • If you are denied access, it may be because someone else is accessing the page. Try again a little later (or email stokes@nyu.edu)

name topic type of paper
example name "example topic"
  "Effect of specimen temperature on radiation damage" tech
  "Denoising and segmentation of tomographic reconstructions" tech
  "Advantages of the spot scan imaging mode" tech
  "Validation of single particle reconstructions" tech
  "3D reconstruction of HIV envelope glycoprotein tomo
Wesley Chao "Electron tomography of intact cells tomo
Changed:
<
<
  "3D reconstruction of insect flight muscle" tomo
>
>
Kenneth McGuinness "3D reconstruction of insect flight muscle" tomo
 
  "Structure of Microtubules in vivo" tomo
Yudong Hao "Structure of the nuclear pore complex" SPA
Thomas Hsiao "Structure of the proteasome" SPA
  "EF-G-mediated translocation as seen by cryo-electron microscopy" SPA
  "Structure of GroEL" SPA
Alexis Jaramillo "Structure of the nicotinic acetylcholine receptor" helical
  "Structure of Tubulin & Microtubules" helical
  "Atomic models describing the interactions of myosin with actin filaments" helical
  "Atomic models describing the interactions kinesins with microtubules" helical
  "Structure of the bacterial flagella" helical
David Hernandez "Structure of bacteriorhodopsin" 2DX
Katie Feher "Structure of aquaporin" 2DX

tech = technical
tomo = tomography
SPA = single particle analysis
helical = helical reconstruction
2DX = 2D crystallography

  • Set ALLOWTOPICVIEW =

-- DavidStokes - 07 Aug 2013

Revision 810 Dec 2013 - Main.KatieFeher

 
META TOPICPARENT name="CemCourseGroup"
Final papers are due on Dec 20. Send pdf to stokes@nyu.edu

  • Papers should be about 5 pages of text for the body.
  • Figures should be included to illustrate the structures and mechanisms discussed in the paper. References should be cited within the body of the text and a bibliography included at the end. References and Figures are not included in the 5-page limit.
  • Papers should include background material setting the context for the topic. A review of relevant literature.
  • Papers should include some discussion of the technical EM methods that have advanced the field.
  • A critical view of the results and conclusions of the literature is encouraged.
  • End with some conclusions/recommendations/future directions. The topics are pretty diverse, so no one template will work for everyone.
  • Please do not choose a topic closely related to the research in your own laboratory. Use this as an opportunity to learn about a new topic.
  • Good luck.

Sign up for Paper Topics in the table below:

  • Go to the bottom of this page.
  • Hit the "Edit" link.
  • Enter your name in between the first set of vertical bars (| |) as in the first example.
  • Hit "Preview Changes" button
  • You may use the "go back" button of your web browser to fix problems
  • "Hit "Save Changes" at the bottom of the preview page to finalize the signup

  • Only one person per topic, unless they all get used up.
  • If you are denied access, it may be because someone else is accessing the page. Try again a little later (or email stokes@nyu.edu)

name topic type of paper
example name "example topic"
  "Effect of specimen temperature on radiation damage" tech
  "Denoising and segmentation of tomographic reconstructions" tech
  "Advantages of the spot scan imaging mode" tech
  "Validation of single particle reconstructions" tech
  "3D reconstruction of HIV envelope glycoprotein tomo
Wesley Chao "Electron tomography of intact cells tomo
  "3D reconstruction of insect flight muscle" tomo
  "Structure of Microtubules in vivo" tomo
Yudong Hao "Structure of the nuclear pore complex" SPA
Thomas Hsiao "Structure of the proteasome" SPA
  "EF-G-mediated translocation as seen by cryo-electron microscopy" SPA
Changed:
<
<
Katie Feher "Structure of GroEL" SPA
>
>
  "Structure of GroEL" SPA
 
Alexis Jaramillo "Structure of the nicotinic acetylcholine receptor" helical
  "Structure of Tubulin & Microtubules" helical
  "Atomic models describing the interactions of myosin with actin filaments" helical
  "Atomic models describing the interactions kinesins with microtubules" helical
  "Structure of the bacterial flagella" helical
David Hernandez "Structure of bacteriorhodopsin" 2DX
Changed:
<
<
  "Structure of aquaporin" 2DX
>
>
Katie Feher "Structure of aquaporin" 2DX
 tech = technical
tomo = tomography
SPA = single particle analysis
helical = helical reconstruction
2DX = 2D crystallography

  • Set ALLOWTOPICVIEW =

-- DavidStokes - 07 Aug 2013

Revision 705 Dec 2013 - Main.WesleyChao

 
META TOPICPARENT name="CemCourseGroup"
Final papers are due on Dec 20. Send pdf to stokes@nyu.edu

  • Papers should be about 5 pages of text for the body.
  • Figures should be included to illustrate the structures and mechanisms discussed in the paper. References should be cited within the body of the text and a bibliography included at the end. References and Figures are not included in the 5-page limit.
  • Papers should include background material setting the context for the topic. A review of relevant literature.
  • Papers should include some discussion of the technical EM methods that have advanced the field.
  • A critical view of the results and conclusions of the literature is encouraged.
  • End with some conclusions/recommendations/future directions. The topics are pretty diverse, so no one template will work for everyone.
  • Please do not choose a topic closely related to the research in your own laboratory. Use this as an opportunity to learn about a new topic.
  • Good luck.

Sign up for Paper Topics in the table below:

  • Go to the bottom of this page.
  • Hit the "Edit" link.
  • Enter your name in between the first set of vertical bars (| |) as in the first example.
  • Hit "Preview Changes" button
  • You may use the "go back" button of your web browser to fix problems
  • "Hit "Save Changes" at the bottom of the preview page to finalize the signup

  • Only one person per topic, unless they all get used up.
  • If you are denied access, it may be because someone else is accessing the page. Try again a little later (or email stokes@nyu.edu)

name topic type of paper
example name "example topic"
  "Effect of specimen temperature on radiation damage" tech
  "Denoising and segmentation of tomographic reconstructions" tech
  "Advantages of the spot scan imaging mode" tech
  "Validation of single particle reconstructions" tech
  "3D reconstruction of HIV envelope glycoprotein tomo
Changed:
<
<
  "Electron tomography of intact cells tomo
>
>
Wesley Chao "Electron tomography of intact cells tomo
 
  "3D reconstruction of insect flight muscle" tomo
  "Structure of Microtubules in vivo" tomo
Yudong Hao "Structure of the nuclear pore complex" SPA
Thomas Hsiao "Structure of the proteasome" SPA
  "EF-G-mediated translocation as seen by cryo-electron microscopy" SPA
Katie Feher "Structure of GroEL" SPA
Alexis Jaramillo "Structure of the nicotinic acetylcholine receptor" helical
  "Structure of Tubulin & Microtubules" helical
  "Atomic models describing the interactions of myosin with actin filaments" helical
  "Atomic models describing the interactions kinesins with microtubules" helical
  "Structure of the bacterial flagella" helical
David Hernandez "Structure of bacteriorhodopsin" 2DX
  "Structure of aquaporin" 2DX

tech = technical
tomo = tomography
SPA = single particle analysis
helical = helical reconstruction
2DX = 2D crystallography

  • Set ALLOWTOPICVIEW =

-- DavidStokes - 07 Aug 2013

Revision 604 Dec 2013 - Main.YudongHao

 
META TOPICPARENT name="CemCourseGroup"
Final papers are due on Dec 20. Send pdf to stokes@nyu.edu

  • Papers should be about 5 pages of text for the body.
  • Figures should be included to illustrate the structures and mechanisms discussed in the paper. References should be cited within the body of the text and a bibliography included at the end. References and Figures are not included in the 5-page limit.
  • Papers should include background material setting the context for the topic. A review of relevant literature.
  • Papers should include some discussion of the technical EM methods that have advanced the field.
  • A critical view of the results and conclusions of the literature is encouraged.
  • End with some conclusions/recommendations/future directions. The topics are pretty diverse, so no one template will work for everyone.
  • Please do not choose a topic closely related to the research in your own laboratory. Use this as an opportunity to learn about a new topic.
  • Good luck.

Sign up for Paper Topics in the table below:

  • Go to the bottom of this page.
  • Hit the "Edit" link.
  • Enter your name in between the first set of vertical bars (| |) as in the first example.
  • Hit "Preview Changes" button
  • You may use the "go back" button of your web browser to fix problems
  • "Hit "Save Changes" at the bottom of the preview page to finalize the signup

  • Only one person per topic, unless they all get used up.
  • If you are denied access, it may be because someone else is accessing the page. Try again a little later (or email stokes@nyu.edu)

name topicdown type of paper
  "3D reconstruction of HIV envelope glycoprotein tomo
  "3D reconstruction of insect flight muscle" tomo
  "Advantages of the spot scan imaging mode" tech
  "Denoising and segmentation of tomographic reconstructions" tech
  "Effect of specimen temperature on radiation damage" tech
  "Electron tomography of intact cells tomo
example name "example topic"
  "Structure of Microtubules in vivo" tomo
  "Validation of single particle reconstructions" tech
Changed:
<
<
  "Structure of the nuclear pore complex" SPA
>
>
Yudong Hao "Structure of the nuclear pore complex" SPA
 
Thomas Hsiao "Structure of the proteasome" SPA
  "EF-G-mediated translocation as seen by cryo-electron microscopy" SPA
Katie Feher "Structure of GroEL" SPA
Alexis Jaramillo "Structure of the nicotinic acetylcholine receptor" helical
  "Structure of Tubulin & Microtubules" helical
  "Atomic models describing the interactions of myosin with actin filaments" helical
  "Atomic models describing the interactions kinesins with microtubules" helical
  "Structure of the bacterial flagella" helical
David Hernandez "Structure of bacteriorhodopsin" 2DX
  "Structure of aquaporin" 2DX

tech = technical
tomo = tomography
SPA = single particle analysis
helical = helical reconstruction
2DX = 2D crystallography

  • Set ALLOWTOPICVIEW =

-- DavidStokes - 07 Aug 2013

Revision 524 Nov 2013 - Main.KatieFeher

 
META TOPICPARENT name="CemCourseGroup"
Final papers are due on Dec 20. Send pdf to stokes@nyu.edu

  • Papers should be about 5 pages of text for the body.
  • Figures should be included to illustrate the structures and mechanisms discussed in the paper. References should be cited within the body of the text and a bibliography included at the end. References and Figures are not included in the 5-page limit.
  • Papers should include background material setting the context for the topic. A review of relevant literature.
  • Papers should include some discussion of the technical EM methods that have advanced the field.
  • A critical view of the results and conclusions of the literature is encouraged.
  • End with some conclusions/recommendations/future directions. The topics are pretty diverse, so no one template will work for everyone.
  • Please do not choose a topic closely related to the research in your own laboratory. Use this as an opportunity to learn about a new topic.
  • Good luck.

Sign up for Paper Topics in the table below:

  • Go to the bottom of this page.
  • Hit the "Edit" link.
  • Enter your name in between the first set of vertical bars (| |) as in the first example.
  • Hit "Preview Changes" button
  • You may use the "go back" button of your web browser to fix problems
  • "Hit "Save Changes" at the bottom of the preview page to finalize the signup

  • Only one person per topic, unless they all get used up.
  • If you are denied access, it may be because someone else is accessing the page. Try again a little later (or email stokes@nyu.edu)

name topic type of paper
example name "example topic"
  "Effect of specimen temperature on radiation damage" tech
  "Denoising and segmentation of tomographic reconstructions" tech
  "Advantages of the spot scan imaging mode" tech
  "Validation of single particle reconstructions" tech
  "3D reconstruction of HIV envelope glycoprotein tomo
  "Electron tomography of intact cells tomo
  "3D reconstruction of insect flight muscle" tomo
  "Structure of Microtubules in vivo" tomo
  "Structure of the nuclear pore complex" SPA
Thomas Hsiao "Structure of the proteasome" SPA
  "EF-G-mediated translocation as seen by cryo-electron microscopy" SPA
Changed:
<
<
  "Structure of GroEL" SPA
>
>
Katie Feher "Structure of GroEL" SPA
 
Alexis Jaramillo "Structure of the nicotinic acetylcholine receptor" helical
  "Structure of Tubulin & Microtubules" helical
  "Atomic models describing the interactions of myosin with actin filaments" helical
  "Atomic models describing the interactions kinesins with microtubules" helical
  "Structure of the bacterial flagella" helical
David Hernandez "Structure of bacteriorhodopsin" 2DX
  "Structure of aquaporin" 2DX

tech = technical
tomo = tomography
SPA = single particle analysis
helical = helical reconstruction
2DX = 2D crystallography

  • Set ALLOWTOPICVIEW =

-- DavidStokes - 07 Aug 2013

Revision 409 Nov 2013 - Main.DavidHernandez

 
META TOPICPARENT name="CemCourseGroup"
Final papers are due on Dec 20. Send pdf to stokes@nyu.edu

  • Papers should be about 5 pages of text for the body.
  • Figures should be included to illustrate the structures and mechanisms discussed in the paper. References should be cited within the body of the text and a bibliography included at the end. References and Figures are not included in the 5-page limit.
  • Papers should include background material setting the context for the topic. A review of relevant literature.
  • Papers should include some discussion of the technical EM methods that have advanced the field.
  • A critical view of the results and conclusions of the literature is encouraged.
  • End with some conclusions/recommendations/future directions. The topics are pretty diverse, so no one template will work for everyone.
  • Please do not choose a topic closely related to the research in your own laboratory. Use this as an opportunity to learn about a new topic.
  • Good luck.

Sign up for Paper Topics in the table below:

  • Go to the bottom of this page.
  • Hit the "Edit" link.
  • Enter your name in between the first set of vertical bars (| |) as in the first example.
  • Hit "Preview Changes" button
  • You may use the "go back" button of your web browser to fix problems
  • "Hit "Save Changes" at the bottom of the preview page to finalize the signup

  • Only one person per topic, unless they all get used up.
  • If you are denied access, it may be because someone else is accessing the page. Try again a little later (or email stokes@nyu.edu)

name topic type of paper
example name "example topic"
  "Effect of specimen temperature on radiation damage" tech
  "Denoising and segmentation of tomographic reconstructions" tech
  "Advantages of the spot scan imaging mode" tech
  "Validation of single particle reconstructions" tech
  "3D reconstruction of HIV envelope glycoprotein tomo
  "Electron tomography of intact cells tomo
  "3D reconstruction of insect flight muscle" tomo
  "Structure of Microtubules in vivo" tomo
  "Structure of the nuclear pore complex" SPA
Thomas Hsiao "Structure of the proteasome" SPA
  "EF-G-mediated translocation as seen by cryo-electron microscopy" SPA
  "Structure of GroEL" SPA
Alexis Jaramillo "Structure of the nicotinic acetylcholine receptor" helical
  "Structure of Tubulin & Microtubules" helical
  "Atomic models describing the interactions of myosin with actin filaments" helical
  "Atomic models describing the interactions kinesins with microtubules" helical
  "Structure of the bacterial flagella" helical
Changed:
<
<
  "Structure of bacteriorhodopsin" 2DX
>
>
David Hernandez "Structure of bacteriorhodopsin" 2DX
 
  "Structure of aquaporin" 2DX

tech = technical
tomo = tomography
SPA = single particle analysis
helical = helical reconstruction
2DX = 2D crystallography

  • Set ALLOWTOPICVIEW =

-- DavidStokes - 07 Aug 2013

Revision 323 Oct 2013 - Main.AlexisJaramillo

 
META TOPICPARENT name="CemCourseGroup"
Final papers are due on Dec 20. Send pdf to stokes@nyu.edu

  • Papers should be about 5 pages of text for the body.
  • Figures should be included to illustrate the structures and mechanisms discussed in the paper. References should be cited within the body of the text and a bibliography included at the end. References and Figures are not included in the 5-page limit.
  • Papers should include background material setting the context for the topic. A review of relevant literature.
  • Papers should include some discussion of the technical EM methods that have advanced the field.
  • A critical view of the results and conclusions of the literature is encouraged.
  • End with some conclusions/recommendations/future directions. The topics are pretty diverse, so no one template will work for everyone.
  • Please do not choose a topic closely related to the research in your own laboratory. Use this as an opportunity to learn about a new topic.
  • Good luck.

Sign up for Paper Topics in the table below:

  • Go to the bottom of this page.
  • Hit the "Edit" link.
  • Enter your name in between the first set of vertical bars (| |) as in the first example.
  • Hit "Preview Changes" button
  • You may use the "go back" button of your web browser to fix problems
  • "Hit "Save Changes" at the bottom of the preview page to finalize the signup

  • Only one person per topic, unless they all get used up.
  • If you are denied access, it may be because someone else is accessing the page. Try again a little later (or email stokes@nyu.edu)

name topic type of paper
example name "example topic"
  "Effect of specimen temperature on radiation damage" tech
  "Denoising and segmentation of tomographic reconstructions" tech
  "Advantages of the spot scan imaging mode" tech
  "Validation of single particle reconstructions" tech
  "3D reconstruction of HIV envelope glycoprotein tomo
  "Electron tomography of intact cells tomo
  "3D reconstruction of insect flight muscle" tomo
  "Structure of Microtubules in vivo" tomo
  "Structure of the nuclear pore complex" SPA
Thomas Hsiao "Structure of the proteasome" SPA
  "EF-G-mediated translocation as seen by cryo-electron microscopy" SPA
  "Structure of GroEL" SPA
Changed:
<
<
  "Structure of the nicotinic acetylcholine receptor" helical
>
>
Alexis Jaramillo "Structure of the nicotinic acetylcholine receptor" helical
 
  "Structure of Tubulin & Microtubules" helical
  "Atomic models describing the interactions of myosin with actin filaments" helical
  "Atomic models describing the interactions kinesins with microtubules" helical
  "Structure of the bacterial flagella" helical
  "Structure of bacteriorhodopsin" 2DX
  "Structure of aquaporin" 2DX

tech = technical
tomo = tomography
SPA = single particle analysis
helical = helical reconstruction
2DX = 2D crystallography

  • Set ALLOWTOPICVIEW =

-- DavidStokes - 07 Aug 2013

Revision 201 Oct 2013 - Main.ThomasHsiao

 
META TOPICPARENT name="CemCourseGroup"
Final papers are due on Dec 20. Send pdf to stokes@nyu.edu

  • Papers should be about 5 pages of text for the body.
  • Figures should be included to illustrate the structures and mechanisms discussed in the paper. References should be cited within the body of the text and a bibliography included at the end. References and Figures are not included in the 5-page limit.
  • Papers should include background material setting the context for the topic. A review of relevant literature.
  • Papers should include some discussion of the technical EM methods that have advanced the field.
  • A critical view of the results and conclusions of the literature is encouraged.
  • End with some conclusions/recommendations/future directions. The topics are pretty diverse, so no one template will work for everyone.
  • Please do not choose a topic closely related to the research in your own laboratory. Use this as an opportunity to learn about a new topic.
  • Good luck.

Sign up for Paper Topics in the table below:

  • Go to the bottom of this page.
  • Hit the "Edit" link.
  • Enter your name in between the first set of vertical bars (| |) as in the first example.
  • Hit "Preview Changes" button
  • You may use the "go back" button of your web browser to fix problems
  • "Hit "Save Changes" at the bottom of the preview page to finalize the signup

  • Only one person per topic, unless they all get used up.
  • If you are denied access, it may be because someone else is accessing the page. Try again a little later (or email stokes@nyu.edu)

name topic type of paper
example name "example topic"
  "Effect of specimen temperature on radiation damage" tech
  "Denoising and segmentation of tomographic reconstructions" tech
  "Advantages of the spot scan imaging mode" tech
  "Validation of single particle reconstructions" tech
  "3D reconstruction of HIV envelope glycoprotein tomo
  "Electron tomography of intact cells tomo
  "3D reconstruction of insect flight muscle" tomo
  "Structure of Microtubules in vivo" tomo
  "Structure of the nuclear pore complex" SPA
Changed:
<
<
  "Structure of the proteasome" SPA
>
>
Thomas Hsiao "Structure of the proteasome" SPA
 
  "EF-G-mediated translocation as seen by cryo-electron microscopy" SPA
  "Structure of GroEL" SPA
  "Structure of the nicotinic acetylcholine receptor" helical
  "Structure of Tubulin & Microtubules" helical
  "Atomic models describing the interactions of myosin with actin filaments" helical
  "Atomic models describing the interactions kinesins with microtubules" helical
  "Structure of the bacterial flagella" helical
  "Structure of bacteriorhodopsin" 2DX
  "Structure of aquaporin" 2DX

tech = technical
tomo = tomography
SPA = single particle analysis
helical = helical reconstruction
2DX = 2D crystallography

  • Set ALLOWTOPICVIEW =

-- DavidStokes - 07 Aug 2013

Revision 107 Aug 2013 - Main.DavidStokes

 
META TOPICPARENT name="CemCourseGroup"
Final papers are due on Dec 20. Send pdf to stokes@nyu.edu

  • Papers should be about 5 pages of text for the body.
  • Figures should be included to illustrate the structures and mechanisms discussed in the paper. References should be cited within the body of the text and a bibliography included at the end. References and Figures are not included in the 5-page limit.
  • Papers should include background material setting the context for the topic. A review of relevant literature.
  • Papers should include some discussion of the technical EM methods that have advanced the field.
  • A critical view of the results and conclusions of the literature is encouraged.
  • End with some conclusions/recommendations/future directions. The topics are pretty diverse, so no one template will work for everyone.
  • Please do not choose a topic closely related to the research in your own laboratory. Use this as an opportunity to learn about a new topic.
  • Good luck.

Sign up for Paper Topics in the table below:

  • Go to the bottom of this page.
  • Hit the "Edit" link.
  • Enter your name in between the first set of vertical bars (| |) as in the first example.
  • Hit "Preview Changes" button
  • You may use the "go back" button of your web browser to fix problems
  • "Hit "Save Changes" at the bottom of the preview page to finalize the signup

  • Only one person per topic, unless they all get used up.
  • If you are denied access, it may be because someone else is accessing the page. Try again a little later (or email stokes@nyu.edu)

name topic type of paper
example name "example topic"
  "Effect of specimen temperature on radiation damage" tech
  "Denoising and segmentation of tomographic reconstructions" tech
  "Advantages of the spot scan imaging mode" tech
  "Validation of single particle reconstructions" tech
  "3D reconstruction of HIV envelope glycoprotein tomo
  "Electron tomography of intact cells tomo
  "3D reconstruction of insect flight muscle" tomo
  "Structure of Microtubules in vivo" tomo
  "Structure of the nuclear pore complex" SPA
  "Structure of the proteasome" SPA
  "EF-G-mediated translocation as seen by cryo-electron microscopy" SPA
  "Structure of GroEL" SPA
  "Structure of the nicotinic acetylcholine receptor" helical
  "Structure of Tubulin & Microtubules" helical
  "Atomic models describing the interactions of myosin with actin filaments" helical
  "Atomic models describing the interactions kinesins with microtubules" helical
  "Structure of the bacterial flagella" helical
  "Structure of bacteriorhodopsin" 2DX
  "Structure of aquaporin" 2DX

tech = technical
tomo = tomography
SPA = single particle analysis
helical = helical reconstruction
2DX = 2D crystallography

  • Set ALLOWTOPICVIEW =

-- DavidStokes - 07 Aug 2013

 
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