Difference: CemIT (1 vs. 46)

Revision 4626 Aug 2009 - Main.KdDerr

 
META TOPICPARENT name="CemfacGroup"
Changed:
<
<

IT resources at the CEMfac

>
>

IT resources

 

This page is now broken into two parts:

CemITSystem for system admin related issues

CemITApplications for issues related to EM software

  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 4518 Aug 2009 - Main.KdDerr

 
META TOPICPARENT name="CemfacGroup"
Changed:
<
<		IT resources at the CEMfac
>
>

IT resources at the CEMfac

 
Changed:
<
<
>
>
Deleted:
<
<
Interested in EM? Using CEMfac? Principles & Protocols CEMfac Equipment Seminars & Courses
CEMfac Home? CEM Introduction Microscope Schedule NYSBC Directory Cryo-EM public website
 

This page is now broken into two parts:

CemITSystem for system admin related issues

CemITApplications for issues related to EM software

  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 4429 Jul 2009 - Main.DavidStokes

 
META TOPICPARENT name="CemfacGroup"
IT resources at the CEMfac
Interested in EM? Using CEMfac? Principles & Protocols CEMfac Equipment Seminars & Courses
CEMfac Home? CEM Introduction Microscope Schedule NYSBC Directory Cryo-EM public website
Deleted:
<
<
 This page is now broken into two parts:

CemITSystem for system admin related issues

CemITApplications for issues related to EM software

Deleted:
<
<

List of supported SoftWare

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

SingleparticalCrystal -- processing of "bad" 2d crystals by single particle methods

SpiderRefinement -- scripts and instructions for doing reconstruction and refinement on the NYSBC cluster

CemEmanRefinement -- some notes on the "refine" command, taken from EMAN course 2007

CemHelicalPrograms -- notes on compiling and using Helical Reconstruction programs from Toyoshima Lab

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 4329 Jul 2009 - Main.DavidStokes

 
META TOPICPARENT name="CemfacGroup"
IT resources at the CEMfac
Interested in EM? Using CEMfac? Principles & Protocols CEMfac Equipment Seminars & Courses
CEMfac Home? CEM Introduction Microscope Schedule NYSBC Directory Cryo-EM public website

This page is now broken into two parts:

CemITSystem for system admin related issues

Added:
>
>
 CemITApplications for issues related to EM software

List of supported SoftWare

Deleted:
<
<

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

 

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

Deleted:
<
<

SedOneliners -- simple one-line scripts for text file editing

 

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

Deleted:
<
<

PasswordExpire -- how to prevent user passwords from expiring in Windows

 

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

Deleted:
<
<

InstalL2DX -- 2dx image processing package installation

InstallwxPython -- wxPython package installation

 

SingleparticalCrystal -- processing of "bad" 2d crystals by single particle methods

SpiderRefinement -- scripts and instructions for doing reconstruction and refinement on the NYSBC cluster

Deleted:
<
<

CemCluster -- scripts and instructions for using CEM software on the NYSBC cluster

 

CemEmanRefinement -- some notes on the "refine" command, taken from EMAN course 2007

Deleted:
<
<

FedoraBugs -- notes on bugs in newer Fedora and Redhat linux which cause problems with EM software

 

CemHelicalPrograms -- notes on compiling and using Helical Reconstruction programs from Toyoshima Lab

Deleted:
<
<

CemBootUSB -- notes on making a usb thumbdrive bootable (and for booting a CD image off of drive)

CemNumPySciPy -- notes on installing working versions of the numpy and scipy packages on CentOS

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 4229 Jul 2009 - Main.DavidStokes

 
META TOPICPARENT name="CemfacGroup"
IT resources at the CEMfac
Interested in EM? Using CEMfac? Principles & Protocols CEMfac Equipment Seminars & Courses
CEMfac Home? CEM Introduction Microscope Schedule NYSBC Directory Cryo-EM public website

Added:
>
>		This page is now broken into two parts:

CemITSystem for system admin related issues CemITApplications for issues related to EM software

 

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

InstalL2DX -- 2dx image processing package installation

InstallwxPython -- wxPython package installation

SingleparticalCrystal -- processing of "bad" 2d crystals by single particle methods

SpiderRefinement -- scripts and instructions for doing reconstruction and refinement on the NYSBC cluster

CemCluster -- scripts and instructions for using CEM software on the NYSBC cluster

CemEmanRefinement -- some notes on the "refine" command, taken from EMAN course 2007

FedoraBugs -- notes on bugs in newer Fedora and Redhat linux which cause problems with EM software

CemHelicalPrograms -- notes on compiling and using Helical Reconstruction programs from Toyoshima Lab

CemBootUSB -- notes on making a usb thumbdrive bootable (and for booting a CD image off of drive)

CemNumPySciPy -- notes on installing working versions of the numpy and scipy packages on CentOS

  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 4122 Jun 2009 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"
IT resources at the CEMfac
Interested in EM? Using CEMfac? Principles & Protocols CEMfac Equipment Seminars & Courses
CEMfac Home? CEM Introduction Microscope Schedule NYSBC Directory Cryo-EM public website

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

InstalL2DX -- 2dx image processing package installation

InstallwxPython -- wxPython package installation

SingleparticalCrystal -- processing of "bad" 2d crystals by single particle methods

SpiderRefinement -- scripts and instructions for doing reconstruction and refinement on the NYSBC cluster

CemCluster -- scripts and instructions for using CEM software on the NYSBC cluster

CemEmanRefinement -- some notes on the "refine" command, taken from EMAN course 2007

FedoraBugs -- notes on bugs in newer Fedora and Redhat linux which cause problems with EM software

CemHelicalPrograms -- notes on compiling and using Helical Reconstruction programs from Toyoshima Lab

CemBootUSB -- notes on making a usb thumbdrive bootable (and for booting a CD image off of drive)

Added:
>
>

CemNumPySciPy -- notes on installing working versions of the numpy and scipy packages on CentOS

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 4020 Mar 2009 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"
IT resources at the CEMfac
Interested in EM? Using CEMfac? Principles & Protocols CEMfac Equipment Seminars & Courses
CEMfac Home? CEM Introduction Microscope Schedule NYSBC Directory Cryo-EM public website

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

InstalL2DX -- 2dx image processing package installation

InstallwxPython -- wxPython package installation

SingleparticalCrystal -- processing of "bad" 2d crystals by single particle methods

SpiderRefinement -- scripts and instructions for doing reconstruction and refinement on the NYSBC cluster

CemCluster -- scripts and instructions for using CEM software on the NYSBC cluster

CemEmanRefinement -- some notes on the "refine" command, taken from EMAN course 2007

FedoraBugs -- notes on bugs in newer Fedora and Redhat linux which cause problems with EM software

CemHelicalPrograms -- notes on compiling and using Helical Reconstruction programs from Toyoshima Lab

Added:
>
>

CemBootUSB -- notes on making a usb thumbdrive bootable (and for booting a CD image off of drive)

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 3912 Feb 2009 - Main.KakoliMitra

 
META TOPICPARENT name="CemfacGroup"
Changed:
<
<
>
>
Added:
>
>		IT resources at the CEMfac
Interested in EM? Using CEMfac? Principles & Protocols CEMfac Equipment Seminars & Courses
CEMfac Home? CEM Introduction Microscope Schedule NYSBC Directory Cryo-EM public website
 
Changed:
<
<
>
>
Deleted:
<
<
 

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

InstalL2DX -- 2dx image processing package installation

InstallwxPython -- wxPython package installation

SingleparticalCrystal -- processing of "bad" 2d crystals by single particle methods

SpiderRefinement -- scripts and instructions for doing reconstruction and refinement on the NYSBC cluster

CemCluster -- scripts and instructions for using CEM software on the NYSBC cluster

CemEmanRefinement -- some notes on the "refine" command, taken from EMAN course 2007

FedoraBugs -- notes on bugs in newer Fedora and Redhat linux which cause problems with EM software

CemHelicalPrograms -- notes on compiling and using Helical Reconstruction programs from Toyoshima Lab

  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 3827 Nov 2008 - Main.DavidStokes

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

InstalL2DX -- 2dx image processing package installation

InstallwxPython -- wxPython package installation

SingleparticalCrystal -- processing of "bad" 2d crystals by single particle methods

SpiderRefinement -- scripts and instructions for doing reconstruction and refinement on the NYSBC cluster

CemCluster -- scripts and instructions for using CEM software on the NYSBC cluster

CemEmanRefinement -- some notes on the "refine" command, taken from EMAN course 2007

FedoraBugs -- notes on bugs in newer Fedora and Redhat linux which cause problems with EM software

Added:
>
>

CemHelicalPrograms -- notes on compiling and using Helical Reconstruction programs from Toyoshima Lab

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 3721 Oct 2008 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

InstalL2DX -- 2dx image processing package installation

InstallwxPython -- wxPython package installation

SingleparticalCrystal -- processing of "bad" 2d crystals by single particle methods

SpiderRefinement -- scripts and instructions for doing reconstruction and refinement on the NYSBC cluster

CemCluster -- scripts and instructions for using CEM software on the NYSBC cluster

CemEmanRefinement -- some notes on the "refine" command, taken from EMAN course 2007

Added:
>
>

FedoraBugs -- notes on bugs in newer Fedora and Redhat linux which cause problems with EM software

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 3618 Aug 2008 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

InstalL2DX -- 2dx image processing package installation

InstallwxPython -- wxPython package installation

SingleparticalCrystal -- processing of "bad" 2d crystals by single particle methods

SpiderRefinement -- scripts and instructions for doing reconstruction and refinement on the NYSBC cluster

CemCluster -- scripts and instructions for using CEM software on the NYSBC cluster

Added:
>
>

CemEmanRefinement -- some notes on the "refine" command, taken from EMAN course 2007

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 3515 Aug 2008 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

InstalL2DX -- 2dx image processing package installation

InstallwxPython -- wxPython package installation

SingleparticalCrystal -- processing of "bad" 2d crystals by single particle methods

SpiderRefinement -- scripts and instructions for doing reconstruction and refinement on the NYSBC cluster

Added:
>
>

CemCluster -- scripts and instructions for using CEM software on the NYSBC cluster

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 3401 Jul 2008 - Main.DavidStokes

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

InstalL2DX -- 2dx image processing package installation

Changed:
<
<

InstallwxPython -- gxPython package installation

>
>

InstallwxPython -- wxPython package installation

 

SingleparticalCrystal -- processing of "bad" 2d crystals by single particle methods

SpiderRefinement -- scripts and instructions for doing reconstruction and refinement on the NYSBC cluster

  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 3301 Jul 2008 - Main.DavidStokes

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

InstalL2DX -- 2dx image processing package installation

Changed:
<
<

InstallgxPython? -- gxPython package installation

>
>

InstallwxPython -- gxPython package installation

 

SingleparticalCrystal -- processing of "bad" 2d crystals by single particle methods

SpiderRefinement -- scripts and instructions for doing reconstruction and refinement on the NYSBC cluster

  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 3213 Jun 2008 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

InstalL2DX -- 2dx image processing package installation

InstallgxPython? -- gxPython package installation

SingleparticalCrystal -- processing of "bad" 2d crystals by single particle methods

Added:
>
>

SpiderRefinement -- scripts and instructions for doing reconstruction and refinement on the NYSBC cluster

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 3129 May 2008 - Main.DavidStokes

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

InstalL2DX -- 2dx image processing package installation

Added:
>
>

InstallgxPython? -- gxPython package installation

 

SingleparticalCrystal -- processing of "bad" 2d crystals by single particle methods

  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 3006 Feb 2008 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

InstalL2DX -- 2dx image processing package installation

Added:
>
>

SingleparticalCrystal -- processing of "bad" 2d crystals by single particle methods

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 2914 Nov 2007 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

Changed:
<
<

Install2Dx -- 2dx image processing package installation

>
>

InstalL2DX -- 2dx image processing package installation

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 2814 Nov 2007 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

Changed:
<
<

Install2DX -- 2dx image processing package installation

>
>

Install2Dx -- 2dx image processing package installation

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 2714 Nov 2007 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

Changed:
<
<

2DX -- 2dx image processing package installation

>
>

Install2DX -- 2dx image processing package installation

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 2614 Nov 2007 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

ProjectorDisplay -- Instructions for A-11 computer projection display

Added:
>
>

2DX -- 2dx image processing package installation

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 2530 Oct 2007 - Main.KdDerr

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

AmiraMovie -- Instructions for making a movie in Amira

Added:
>
>

ProjectorDisplay -- Instructions for A-11 computer projection display

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 2405 Jul 2007 - Main.AndreaNans

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

Changed:
<
<

AmiraMovie -- Instructions for making amovie in Amira

>
>

AmiraMovie -- Instructions for making a movie in Amira

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 2305 Jul 2007 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

FileConversion -- steps for plotting CTF profile

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

Added:
>
>

AmiraMovie -- Instructions for making amovie in Amira

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 2230 Nov 2006 - Main.DavidStokes

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

Added:
>
>

FileConversion -- steps for plotting CTF profile

 

HelicalProcessing -- Tips on helical processing

PasswordExpire -- how to prevent user passwords from expiring in Windows

  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 2112 Oct 2006 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

HelicalProcessing -- Tips on helical processing

Added:
>
>

PasswordExpire -- how to prevent user passwords from expiring in Windows

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 2002 Oct 2006 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

Changed:
<
<

HelicalPRocessing? -- Tips on helical processing

>
>

HelicalProcessing -- Tips on helical processing

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 1902 Oct 2006 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

Added:
>
>

HelicalPRocessing? -- Tips on helical processing

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 1822 Aug 2006 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

Added:
>
>

DisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 1702 Jun 2006 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

Deleted:
<
<
  • Set ALLOWTOPICVIEW =
 
Changed:
<
<		-- BillRice - 19 Jan 2006
>
>

DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF format

Added:
>
>
  • Set ALLOWTOPICVIEW =
 
Added:
>
>		-- BillRice - 19 Jan 2006

Revision 1602 May 2006 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"
Changed:
<
<

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

SedOneliners -- simple one-line scripts for text file editing

  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

>
>

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

MontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)

SedOneliners -- simple one-line scripts for text file editing

  • Set ALLOWTOPICVIEW =
Added:
>
>		-- BillRice - 19 Jan 2006

Revision 1520 Apr 2006 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

Changed:
<
<

SedOneliners -- simple one-line scripts to accomplish various tasks

>
>

SedOneliners -- simple one-line scripts for text file editing

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 1420 Apr 2006 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

FsuTomograms -- processing of tomograms using FSU package

Added:
>
>

SedOneliners -- simple one-line scripts to accomplish various tasks

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 1330 Mar 2006 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

List of supported SoftWare

CshrcFile -- recommended environment settings

CompilerInfo -- notes on AMD and 64-bit linux compilation.

MemoryHole -- for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation.

ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)

Instructions for MovieMaking

AmiraLoad -- Loading images for viewing in Amira

Added:
>
>

FsuTomograms -- processing of tomograms using FSU package

 
  • Set ALLOWTOPICVIEW =

-- BillRice - 19 Jan 2006

Revision 1229 Mar 2006 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"
Changed:
<
<

List of Supported Software

>
>
 
Deleted:
<
<

EM Image Processing

 
Deleted:
<
<
Program Version Location
Spider Dec 2004 dl380/cryoem/spider/
IMOD 3.38 dl380/cryoem/
Amira 3.0 dl380/cryoem/Amira-3.0/
Amira 3.1 dl380/cryoem/Amira-3.1/
Web   dl380/cryoem/web/java/linux/
em2em 040122 dl380/cryoem/em2em/em2em.e
image2000   dl380/cryoem/image2000/
MRC/Nigel Unwin helical software tbi  
Situs 2.2 dl380/cryoem/Situs_2.2/
 
Deleted:
<
<

PDB Viewing/Manipulation/Rendering

Program Version Location Launch Command
Deepview/Swiss PDBViewer 3.7sp5 /dl380/cryoem/SPDBV/ /dl380/cryoem/bin/spdbv
Pymol 0.98rc3 /dl380/cryoem/pymol/ /dl380/cryoem/bin/pymol.com
Chimera 1.2184 /dl380/cryoem/chimera /dl380/cryoem/bin/chimera
O 10.0.1 /dl380/cryoem/ono_10.0.1 /dl380/cryoem/bin/ono
Gerard Kleywegt Software Suite downloaded 1/19/06 /dl380/cryoem/bin/gerard/ various
Rasmol 2.7.2.1.1 /dl380/cryoem/bin/rasmol_bin/ /dl380/cryoem/bin/rasmol (32-bit version)
 
Changed:
<
<

Recommended cshrc file

>
>
Added:
>
>

List of supported SoftWare

 
Changed:
<
<
>
>
 CshrcFile -- recommended environment settings 
 
 Changed: 
<
<		setenv PATH /cryoem/fsu-tomo/tomo-1.0.8-i686/bin/:/usr/bin:/usr/local/bin:/bin:/sbin:/usr/sbin:/cryoem/bin:/usr/kerberos/bin:/usr/X11R6/bin:/cryoem/Situs_2.2/bin/
>
>
 CompilerInfo --  notes on AMD and 64-bit linux compilation. 
 Deleted: 
<
<		alias imod_env 'source /cryoem/IMOD/IMOD-linux.csh'
set history=500
setenv EMANDIR /cryoem/EMAN
setenv PATH ${EMANDIR}/bin:${PATH}
setenv LD_LIBRARY_PATH /usr/local/lib:/usr/X11R6/lib:${EMANDIR}/lib
setenv PYTHONPATH ${EMANDIR}/lib
setenv IMAGEBIN /cryoem/image2000/bin
setenv IMAGIC_ROOT /cryoem/em2em
setenv SPMAN_DIR /cryoem/spider/man/
 
 Changed: 
<
<
>
>
 MemoryHole --  for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM. Also notes on Fedora OS installation. 
 
 Changed: 
<
<		See CompilerInfo for notes on AMD and 64-bit linux compilation.
>
>
 ImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies) 
 
 Changed: 
<
<		See MemoryHole for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM.
>
>
 Instructions for MovieMaking 
 
 Changed: 
<
<		Instructions for MovieMaking
>
>
 AmiraLoad -- Loading images for viewing in Amira 
  
    

  •  Set ALLOWTOPICVIEW = 

 


-- BillRice - 19 Jan 2006
Revision 1128 Mar 2006 - Main.BillRice


 

  META TOPICPARENT   name="CemfacGroup" 




 List of Supported Software 




 EM Image Processing 














 Program  Version  Location 


 Spider  Dec 2004  dl380/cryoem/spider/ 


 IMOD  3.38  dl380/cryoem/ 


 Amira  3.0  dl380/cryoem/Amira-3.0/ 


 Amira  3.1  dl380/cryoem/Amira-3.1/ 


 Web     dl380/cryoem/web/java/linux/ 


 em2em  040122  dl380/cryoem/em2em/em2em.e 


 image2000     dl380/cryoem/image2000/ 


 MRC/Nigel Unwin helical software  tbi    


 Situs  2.2  dl380/cryoem/Situs_2.2/ 






 PDB Viewing/Manipulation/Rendering 









 Program  Version  Location  Launch Command 


 Deepview/Swiss PDBViewer  3.7sp5  /dl380/cryoem/SPDBV/  /dl380/cryoem/bin/spdbv 


 Pymol  0.98rc3  /dl380/cryoem/pymol/  /dl380/cryoem/bin/pymol.com 


 Chimera  1.2184  /dl380/cryoem/chimera  /dl380/cryoem/bin/chimera 


 O  10.0.1  /dl380/cryoem/ono_10.0.1  /dl380/cryoem/bin/ono 


 Gerard Kleywegt Software Suite  downloaded 1/19/06  /dl380/cryoem/bin/gerard/  various 


 Rasmol  2.7.2.1.1  /dl380/cryoem/bin/rasmol_bin/  /dl380/cryoem/bin/rasmol (32-bit version) 






 Recommended cshrc file 





setenv PATH /cryoem/fsu-tomo/tomo-1.0.8-i686/bin/:/usr/bin:/usr/local/bin:/bin:/sbin:/usr/sbin:/cryoem/bin:/usr/kerberos/bin:/usr/X11R6/bin:/cryoem/Situs_2.2/bin/
alias imod_env 'source /cryoem/IMOD/IMOD-linux.csh'
set history=500
setenv EMANDIR /cryoem/EMAN
setenv PATH ${EMANDIR}/bin:${PATH}
setenv LD_LIBRARY_PATH /usr/local/lib:/usr/X11R6/lib:${EMANDIR}/lib
setenv PYTHONPATH ${EMANDIR}/lib
setenv IMAGEBIN /cryoem/image2000/bin
setenv IMAGIC_ROOT /cryoem/em2em
setenv SPMAN_DIR /cryoem/spider/man/





See CompilerInfo for notes on AMD and 64-bit linux compilation.


See MemoryHole for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM.
 Added: 
>
>		Instructions for MovieMaking
  
    

  •  Set ALLOWTOPICVIEW = 

 


-- BillRice - 19 Jan 2006
Revision 1021 Mar 2006 - Main.BillRice


 

  META TOPICPARENT   name="CemfacGroup" 




 List of Supported Software 




 EM Image Processing 














 Program  Version  Location 


 Spider  Dec 2004  dl380/cryoem/spider/ 


 IMOD  3.38  dl380/cryoem/ 


 Amira  3.0  dl380/cryoem/Amira-3.0/ 


 Amira  3.1  dl380/cryoem/Amira-3.1/ 


 Web     dl380/cryoem/web/java/linux/ 


 em2em  040122  dl380/cryoem/em2em/em2em.e 


 image2000     dl380/cryoem/image2000/ 


 MRC/Nigel Unwin helical software  tbi    


 Situs  2.2  dl380/cryoem/Situs_2.2/ 






 PDB Viewing/Manipulation/Rendering 









 Program  Version  Location  Launch Command 


 Deepview/Swiss PDBViewer  3.7sp5  /dl380/cryoem/SPDBV/  /dl380/cryoem/bin/spdbv 


 Pymol  0.98rc3  /dl380/cryoem/pymol/  /dl380/cryoem/bin/pymol.com 


 Chimera  1.2184  /dl380/cryoem/chimera  /dl380/cryoem/bin/chimera 


 O  10.0.1  /dl380/cryoem/ono_10.0.1  /dl380/cryoem/bin/ono 


 Gerard Kleywegt Software Suite  downloaded 1/19/06  /dl380/cryoem/bin/gerard/  various 


 Rasmol  2.7.2.1.1  /dl380/cryoem/bin/rasmol_bin/  /dl380/cryoem/bin/rasmol (32-bit version) 






 Recommended cshrc file 





setenv PATH /cryoem/fsu-tomo/tomo-1.0.8-i686/bin/:/usr/bin:/usr/local/bin:/bin:/sbin:/usr/sbin:/cryoem/bin:/usr/kerberos/bin:/usr/X11R6/bin:/cryoem/Situs_2.2/bin/
alias imod_env 'source /cryoem/IMOD/IMOD-linux.csh'
set history=500
setenv EMANDIR /cryoem/EMAN
setenv PATH ${EMANDIR}/bin:${PATH}
setenv LD_LIBRARY_PATH /usr/local/lib:/usr/X11R6/lib:${EMANDIR}/lib
setenv PYTHONPATH ${EMANDIR}/lib
setenv IMAGEBIN /cryoem/image2000/bin
setenv IMAGIC_ROOT /cryoem/em2em
setenv SPMAN_DIR /cryoem/spider/man/


 Changed: 
<
<		See CompilerInfo for notes on AMD and 64-bit linux compilation
>
>		See CompilerInfo for notes on AMD and 64-bit linux compilation.
 Added: 
>
>		See MemoryHole for notes on configuring the BIOS of our 64-bit AMD system to recognize all 4 GB of RAM.
  
    

  •  Set ALLOWTOPICVIEW = 

 


-- BillRice - 19 Jan 2006
Revision 915 Feb 2006 - Main.BillRice


 

  META TOPICPARENT   name="CemfacGroup" 




 List of Supported Software 




 EM Image Processing 














 Program  Version  Location 


 Spider  Dec 2004  dl380/cryoem/spider/ 


 IMOD  3.38  dl380/cryoem/ 


 Amira  3.0  dl380/cryoem/Amira-3.0/ 


 Amira  3.1  dl380/cryoem/Amira-3.1/ 


 Web     dl380/cryoem/web/java/linux/ 


 em2em  040122  dl380/cryoem/em2em/em2em.e 


 image2000     dl380/cryoem/image2000/ 


 MRC/Nigel Unwin helical software  tbi    


 Situs  2.2  dl380/cryoem/Situs_2.2/ 






 PDB Viewing/Manipulation/Rendering 









 Program  Version  Location  Launch Command 


 Deepview/Swiss PDBViewer  3.7sp5  /dl380/cryoem/SPDBV/  /dl380/cryoem/bin/spdbv 


 Pymol  0.98rc3  /dl380/cryoem/pymol/  /dl380/cryoem/bin/pymol.com 


 Chimera  1.2184  /dl380/cryoem/chimera  /dl380/cryoem/bin/chimera 


 O  10.0.1  /dl380/cryoem/ono_10.0.1  /dl380/cryoem/bin/ono 


 Gerard Kleywegt Software Suite  downloaded 1/19/06  /dl380/cryoem/bin/gerard/  various 


 Rasmol  2.7.2.1.1  /dl380/cryoem/bin/rasmol_bin/  /dl380/cryoem/bin/rasmol (32-bit version) 






 Recommended cshrc file 





setenv PATH /cryoem/fsu-tomo/tomo-1.0.8-i686/bin/:/usr/bin:/usr/local/bin:/bin:/sbin:/usr/sbin:/cryoem/bin:/usr/kerberos/bin:/usr/X11R6/bin:/cryoem/Situs_2.2/bin/
alias imod_env 'source /cryoem/IMOD/IMOD-linux.csh'
set history=500
setenv EMANDIR /cryoem/EMAN
setenv PATH ${EMANDIR}/bin:${PATH}
setenv LD_LIBRARY_PATH /usr/local/lib:/usr/X11R6/lib:${EMANDIR}/lib
setenv PYTHONPATH ${EMANDIR}/lib
setenv IMAGEBIN /cryoem/image2000/bin
setenv IMAGIC_ROOT /cryoem/em2em
setenv SPMAN_DIR /cryoem/spider/man/


 Changed: 
<
<		CompilerInfo
>
>		See CompilerInfo for notes on AMD and 64-bit linux compilation
  
    

  •  Set ALLOWTOPICVIEW = 

 


-- BillRice - 19 Jan 2006
Revision 815 Feb 2006 - Main.BillRice


 

  META TOPICPARENT   name="CemfacGroup" 




 List of Supported Software 




 EM Image Processing 














 Program  Version  Location 


 Spider  Dec 2004  dl380/cryoem/spider/ 


 IMOD  3.38  dl380/cryoem/ 


 Amira  3.0  dl380/cryoem/Amira-3.0/ 


 Amira  3.1  dl380/cryoem/Amira-3.1/ 


 Web     dl380/cryoem/web/java/linux/ 


 em2em  040122  dl380/cryoem/em2em/em2em.e 


 image2000     dl380/cryoem/image2000/ 


 MRC/Nigel Unwin helical software  tbi    


 Situs  2.2  dl380/cryoem/Situs_2.2/ 






 PDB Viewing/Manipulation/Rendering 









 Program  Version  Location  Launch Command 


 Deepview/Swiss PDBViewer  3.7sp5  /dl380/cryoem/SPDBV/  /dl380/cryoem/bin/spdbv 


 Pymol  0.98rc3  /dl380/cryoem/pymol/  /dl380/cryoem/bin/pymol.com 


 Chimera  1.2184  /dl380/cryoem/chimera  /dl380/cryoem/bin/chimera 


 O  10.0.1  /dl380/cryoem/ono_10.0.1  /dl380/cryoem/bin/ono 


 Gerard Kleywegt Software Suite  downloaded 1/19/06  /dl380/cryoem/bin/gerard/  various 


 Rasmol  2.7.2.1.1  /dl380/cryoem/bin/rasmol_bin/  /dl380/cryoem/bin/rasmol (32-bit version) 






 Recommended cshrc file 





setenv PATH /cryoem/fsu-tomo/tomo-1.0.8-i686/bin/:/usr/bin:/usr/local/bin:/bin:/sbin:/usr/sbin:/cryoem/bin:/usr/kerberos/bin:/usr/X11R6/bin:/cryoem/Situs_2.2/bin/
alias imod_env 'source /cryoem/IMOD/IMOD-linux.csh'
set history=500
setenv EMANDIR /cryoem/EMAN
setenv PATH ${EMANDIR}/bin:${PATH}
setenv LD_LIBRARY_PATH /usr/local/lib:/usr/X11R6/lib:${EMANDIR}/lib
setenv PYTHONPATH ${EMANDIR}/lib
setenv IMAGEBIN /cryoem/image2000/bin
setenv IMAGIC_ROOT /cryoem/em2em
setenv SPMAN_DIR /cryoem/spider/man/


 Added: 
>
>		CompilerInfo
  
    

  •  Set ALLOWTOPICVIEW = 

 


-- BillRice - 19 Jan 2006
Revision 713 Feb 2006 - Main.BillRice


 

  META TOPICPARENT   name="CemfacGroup" 




 List of Supported Software 




 EM Image Processing 














 Program  Version  Location 


 Spider  Dec 2004  dl380/cryoem/spider/ 


 IMOD  3.38  dl380/cryoem/ 


 Amira  3.0  dl380/cryoem/Amira-3.0/ 


 Amira  3.1  dl380/cryoem/Amira-3.1/ 


 Web     dl380/cryoem/web/java/linux/ 


 em2em  040122  dl380/cryoem/em2em/em2em.e 


 image2000     dl380/cryoem/image2000/ 


 MRC/Nigel Unwin helical software  tbi    


 Situs  2.2  dl380/cryoem/Situs_2.2/ 






 PDB Viewing/Manipulation/Rendering 









 Program  Version  Location  Launch Command 


 Deepview/Swiss PDBViewer  3.7sp5  /dl380/cryoem/SPDBV/  /dl380/cryoem/bin/spdbv 


 Pymol  0.98rc3  /dl380/cryoem/pymol/  /dl380/cryoem/bin/pymol.com 


 Chimera  1.2184  /dl380/cryoem/chimera  /dl380/cryoem/bin/chimera 


 O  10.0.1  /dl380/cryoem/ono_10.0.1  /dl380/cryoem/bin/ono 


 Gerard Kleywegt Software Suite  downloaded 1/19/06  /dl380/cryoem/bin/gerard/  various 


 Rasmol  2.7.2.1.1  /dl380/cryoem/bin/rasmol_bin/  /dl380/cryoem/bin/rasmol (32-bit version) 






 Recommended cshrc file 




 Changed: 
<
<		setenv PATH /cryoem/fsu-tomo/tomo-1.0.8-i686/bin/:/usr/bin:/usr/local/bin:/bin:/sbin:/usr/sbin:/dl380/cryoem/bin:/usr/kerberos/bin:/usr/X11R6/bin:/cryoem/Situs_2.2/bin/
>
>		setenv PATH /cryoem/fsu-tomo/tomo-1.0.8-i686/bin/:/usr/bin:/usr/local/bin:/bin:/sbin:/usr/sbin:/cryoem/bin:/usr/kerberos/bin:/usr/X11R6/bin:/cryoem/Situs_2.2/bin/
 alias imod_env 'source /cryoem/IMOD/IMOD-linux.csh'
set history=500
 Changed: 
<
<		setenv EMANDIR /dl380/cryoem/EMAN
>
>		setenv EMANDIR /cryoem/EMAN
 setenv PATH ${EMANDIR}/bin:${PATH}
setenv LD_LIBRARY_PATH /usr/local/lib:/usr/X11R6/lib:${EMANDIR}/lib
setenv PYTHONPATH ${EMANDIR}/lib
setenv IMAGEBIN /cryoem/image2000/bin
setenv IMAGIC_ROOT /cryoem/em2em
setenv SPMAN_DIR /cryoem/spider/man/


 
    

  •  Set ALLOWTOPICVIEW = 

 


-- BillRice - 19 Jan 2006
Revision 610 Feb 2006 - Main.BillRice


 

  META TOPICPARENT   name="CemfacGroup" 




 List of Supported Software 




 EM Image Processing 














 Program  Version  Location 


 Spider  Dec 2004  dl380/cryoem/spider/ 


 IMOD  3.38  dl380/cryoem/ 


 Amira  3.0  dl380/cryoem/Amira-3.0/ 


 Amira  3.1  dl380/cryoem/Amira-3.1/ 


 Web     dl380/cryoem/web/java/linux/ 


 em2em  040122  dl380/cryoem/em2em/em2em.e 


 image2000     dl380/cryoem/image2000/ 


 MRC/Nigel Unwin helical software  tbi    


 Situs  2.2  dl380/cryoem/Situs_2.2/ 






 PDB Viewing/Manipulation/Rendering 









 Program  Version  Location  Launch Command 


 Deepview/Swiss PDBViewer  3.7sp5  /dl380/cryoem/SPDBV/  /dl380/cryoem/bin/spdbv 


 Pymol  0.98rc3  /dl380/cryoem/pymol/  /dl380/cryoem/bin/pymol.com 


 Chimera  1.2184  /dl380/cryoem/chimera  /dl380/cryoem/bin/chimera 


 O  10.0.1  /dl380/cryoem/ono_10.0.1  /dl380/cryoem/bin/ono 


 Gerard Kleywegt Software Suite  downloaded 1/19/06  /dl380/cryoem/bin/gerard/  various 


 Rasmol  2.7.2.1.1  /dl380/cryoem/bin/rasmol_bin/  /dl380/cryoem/bin/rasmol (32-bit version) 


 Added: 
>
>
 Recommended cshrc file 
 
 Added: 
>
>
 
 Added: 
>
>		setenv PATH /cryoem/fsu-tomo/tomo-1.0.8-i686/bin/:/usr/bin:/usr/local/bin:/bin:/sbin:/usr/sbin:/dl380/cryoem/bin:/usr/kerberos/bin:/usr/X11R6/bin:/cryoem/Situs_2.2/bin/
alias imod_env 'source /cryoem/IMOD/IMOD-linux.csh'
set history=500
setenv EMANDIR /dl380/cryoem/EMAN
setenv PATH ${EMANDIR}/bin:${PATH}
setenv LD_LIBRARY_PATH /usr/local/lib:/usr/X11R6/lib:${EMANDIR}/lib
setenv PYTHONPATH ${EMANDIR}/lib
setenv IMAGEBIN /cryoem/image2000/bin
setenv IMAGIC_ROOT /cryoem/em2em
setenv SPMAN_DIR /cryoem/spider/man/
 
 Changed: 
<
<
>
>
  
    

  •  Set ALLOWTOPICVIEW = 

 


-- BillRice - 19 Jan 2006
Revision 526 Jan 2006 - Main.BillRice


 

  META TOPICPARENT   name="CemfacGroup" 




 List of Supported Software 




 EM Image Processing 













 Program  Version  Location 


 Spider  Dec 2004  dl380/cryoem/spider/ 


 IMOD  3.38  dl380/cryoem/ 


 Amira  3.0  dl380/cryoem/Amira-3.0/ 


 Amira  3.1  dl380/cryoem/Amira-3.1/ 


 Web     dl380/cryoem/web/java/linux/ 


 em2em  040122  dl380/cryoem/em2em/em2em.e 


 image2000     dl380/cryoem/image2000/ 


 MRC/Nigel Unwin helical software  tbi    


 Added: 
>
>		

 Situs  2.2  dl380/cryoem/Situs_2.2/ 


 
 PDB Viewing/Manipulation/Rendering 









 Program  Version  Location  Launch Command 


 Deepview/Swiss PDBViewer  3.7sp5  /dl380/cryoem/SPDBV/  /dl380/cryoem/bin/spdbv 


 Pymol  0.98rc3  /dl380/cryoem/pymol/  /dl380/cryoem/bin/pymol.com 


 Chimera  1.2184  /dl380/cryoem/chimera  /dl380/cryoem/bin/chimera 


 O  10.0.1  /dl380/cryoem/ono_10.0.1  /dl380/cryoem/bin/ono 


 Gerard Kleywegt Software Suite  downloaded 1/19/06  /dl380/cryoem/bin/gerard/  various 


 Rasmol  2.7.2.1.1  /dl380/cryoem/bin/rasmol_bin/  /dl380/cryoem/bin/rasmol (32-bit version) 












 
    

  •  Set ALLOWTOPICVIEW = 

 


-- BillRice - 19 Jan 2006
Revision 424 Jan 2006 - Main.BillRice


 

  META TOPICPARENT   name="CemfacGroup" 


 Deleted: 
<
<
 
 List of Supported Software 




 EM Image Processing 













 Program  Version  Location 


 Spider  Dec 2004  dl380/cryoem/spider/ 


 IMOD  3.38  dl380/cryoem/ 


 Amira  3.0  dl380/cryoem/Amira-3.0/ 


 Amira  3.1  dl380/cryoem/Amira-3.1/ 


 Web     dl380/cryoem/web/java/linux/ 


 em2em  040122  dl380/cryoem/em2em/em2em.e 


 image2000     dl380/cryoem/image2000/ 


 MRC/Nigel Unwin helical software  tbi    






 PDB Viewing/Manipulation/Rendering 






 Program  Version  Location  Launch Command 


 Deepview/Swiss PDBViewer  3.7sp5  /dl380/cryoem/SPDBV/  /dl380/cryoem/bin/spdbv 


 Pymol  0.98rc3  /dl380/cryoem/pymol/  /dl380/cryoem/bin/pymol.com 


 Chimera  1.2184  /dl380/cryoem/chimera  /dl380/cryoem/bin/chimera 


 Changed: 
<
<		

 O  10.0.1  /dl380/cryoem/ono_10.0.1  /dl380/cryoem/bin/ono   access code needed  


>
>		

 O  10.0.1  /dl380/cryoem/ono_10.0.1  /dl380/cryoem/bin/ono 


 


 Gerard Kleywegt Software Suite  downloaded 1/19/06  /dl380/cryoem/bin/gerard/  various 


 Rasmol  2.7.2.1.1  /dl380/cryoem/bin/rasmol_bin/  /dl380/cryoem/bin/rasmol (32-bit version) 












 
    

  •  Set ALLOWTOPICVIEW = 

 


-- BillRice - 19 Jan 2006
Revision 320 Jan 2006 - Main.BillRice


 

  META TOPICPARENT   name="CemfacGroup" 


 Deleted: 
<
<
 
 List of Supported Software 




 EM Image Processing 













 Program  Version  Location 


 Spider  Dec 2004  dl380/cryoem/spider/ 


 IMOD  3.38  dl380/cryoem/ 


 Amira  3.0  dl380/cryoem/Amira-3.0/ 


 Amira  3.1  dl380/cryoem/Amira-3.1/ 


 Web     dl380/cryoem/web/java/linux/ 


 em2em  040122  dl380/cryoem/em2em/em2em.e 


 image2000     dl380/cryoem/image2000/ 


 MRC/Nigel Unwin helical software  tbi    






 PDB Viewing/Manipulation/Rendering 






 Program  Version  Location  Launch Command 


 Deepview/Swiss PDBViewer  3.7sp5  /dl380/cryoem/SPDBV/  /dl380/cryoem/bin/spdbv 


 Pymol  0.98rc3  /dl380/cryoem/pymol/  /dl380/cryoem/bin/pymol.com 


 Chimera  1.2184  /dl380/cryoem/chimera  /dl380/cryoem/bin/chimera 


 Changed: 
<
<		

 O  10.0.0  /dl380/cryoem/ono_10.1.1  /dl380/cryoem/bin/ono   access code needed  


>
>		

 O  10.0.1  /dl380/cryoem/ono_10.0.1  /dl380/cryoem/bin/ono   access code needed  


 


 Gerard Kleywegt Software Suite  downloaded 1/19/06  /dl380/cryoem/bin/gerard/  various 


 Rasmol  2.7.2.1.1  /dl380/cryoem/bin/rasmol_bin/  /dl380/cryoem/bin/rasmol (32-bit version) 












 
    

  •  Set ALLOWTOPICVIEW = 

 


-- BillRice - 19 Jan 2006
Revision 219 Jan 2006 - Main.BillRice


 

  META TOPICPARENT   name="CemfacGroup" 


 Deleted: 
<
<		Contents
 


 List of Supported Software 




 EM Image Processing 













 Program  Version  Location 


 Spider  Dec 2004  dl380/cryoem/spider/ 


 IMOD  3.38  dl380/cryoem/ 


 Amira  3.0  dl380/cryoem/Amira-3.0/ 


 Amira  3.1  dl380/cryoem/Amira-3.1/ 


 Web     dl380/cryoem/web/java/linux/ 


 em2em  040122  dl380/cryoem/em2em/em2em.e 


 image2000     dl380/cryoem/image2000/ 


 MRC/Nigel Unwin helical software  tbi    






 PDB Viewing/Manipulation/Rendering 





 Program  Version  Location  Launch Command 


 Deepview/Swiss PDBViewer  3.7sp5  /dl380/cryoem/SPDBV/  /dl380/cryoem/bin/spdbv 


 Pymol  0.98rc3  /dl380/cryoem/pymol/  /dl380/cryoem/bin/pymol.com 


 Changed: 
<
<		




 Chimera  1.2184       


 O  tbi    


 Gerard Kleywegt Software Suite  tbi    


 Rasmol  tbi    


>
>		




 Chimera  1.2184  /dl380/cryoem/chimera  /dl380/cryoem/bin/chimera 


 O  10.0.0  /dl380/cryoem/ono_10.1.1  /dl380/cryoem/bin/ono   access code needed  


 Gerard Kleywegt Software Suite  downloaded 1/19/06  /dl380/cryoem/bin/gerard/  various 


 Rasmol  2.7.2.1.1  /dl380/cryoem/bin/rasmol_bin/  /dl380/cryoem/bin/rasmol (32-bit version) 


 






 
    

  •  Set ALLOWTOPICVIEW = 

 


-- BillRice - 19 Jan 2006
Revision 119 Jan 2006 - Main.BillRice


 

  META TOPICPARENT   name="CemfacGroup" 



Contents





 List of Supported Software 




 EM Image Processing 













 Program  Version  Location 


 Spider  Dec 2004  dl380/cryoem/spider/ 


 IMOD  3.38  dl380/cryoem/ 


 Amira  3.0  dl380/cryoem/Amira-3.0/ 


 Amira  3.1  dl380/cryoem/Amira-3.1/ 


 Web     dl380/cryoem/web/java/linux/ 


 em2em  040122  dl380/cryoem/em2em/em2em.e 


 image2000     dl380/cryoem/image2000/ 


 MRC/Nigel Unwin helical software  tbi    






 PDB Viewing/Manipulation/Rendering 









 Program  Version  Location  Launch Command 


 Deepview/Swiss PDBViewer  3.7sp5  /dl380/cryoem/SPDBV/  /dl380/cryoem/bin/spdbv 


 Pymol  0.98rc3  /dl380/cryoem/pymol/  /dl380/cryoem/bin/pymol.com 


 Chimera  1.2184       


 O  tbi    


 Gerard Kleywegt Software Suite  tbi    


 Rasmol  tbi    












 
    

  •  Set ALLOWTOPICVIEW = 

 


-- BillRice - 19 Jan 2006

 
 View topic
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