Difference: CemIT (43 vs. 44)
Revision 4429 Jul 2009 - Main.DavidStokes
IT resources at the CEMfac
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| This page is now broken into two parts: CemITSystem for system admin related issues CemITApplications for issues related to EM software | |||||||||||||
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| < < | List of supported SoftWareImodNotes -- Notes for converting 3D MRC image stack to series of tiff files (eg for movies)Instructions for MovieMakingAmiraLoad -- Loading images for viewing in AmiraFsuTomograms -- processing of tomograms using FSU packageMontageNavigator -- hints on using the Navigator in SerialEM to create montages (alternative to low-dose searching)DigitalMicrograph2TIF -- Convert a bunch of digital micrograph files to TIFF formatDisplayDepths -- Mixing 8 and 24-bit display depths (useful for WEB, other older software that is 8-bit only)FileConversion -- steps for plotting CTF profileHelicalProcessing -- Tips on helical processingAmiraMovie -- Instructions for making a movie in AmiraProjectorDisplay -- Instructions for A-11 computer projection displaySingleparticalCrystal -- processing of "bad" 2d crystals by single particle methodsSpiderRefinement -- scripts and instructions for doing reconstruction and refinement on the NYSBC clusterCemEmanRefinement -- some notes on the "refine" command, taken from EMAN course 2007CemHelicalPrograms -- notes on compiling and using Helical Reconstruction programs from Toyoshima Lab | ||||||||||||
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