Difference: EmaN2Installation (1 vs. 2)

Revision 231 Jul 2015 - Main.BillRice

META TOPICPARENT	name="CemITSystem"

Contents

Installation and Updating of EMAN2

Installation and Updating of EMAN2

Download and untar the latest release from http://blake.bcm.edu/emanwiki/EMAN2/Install/BinaryInstall
go to installation directory (EMAN2) and run the script eman2-installer
If you wish to use mpirun, then need to update that also
- go to pydusa directory and run modified version of install_mpi.py.txt: install_mpi.py (check the name after download)

to setup mpirun
- yum search openmpi (and install packages)
- get pydusa from sparx web site: http://sparx-em.org/sparxwiki/MPI-installation
- use modified version of install_mpi.py.txt: install_mpi.py (check the name after download)
- include following in .cshrc (or type at command line): module add openmpi-x86_64

Added:

>
>

likely need to modify the default eman2.cshrc so it reads as follows:

setenv EMAN2DIR /cryoem/EMAN2
setenv PATH ${EMAN2DIR}/bin:${EMAN2DIR}/extlib/bin:${PATH}
if ($?LD_LIBRARY_PATH == 0) then
    setenv LD_LIBRARY_PATH ${EMAN2DIR}/lib:${EMAN2DIR}/extlib/lib
else
    setenv LD_LIBRARY_PATH ${EMAN2DIR}/lib:${EMAN2DIR}/extlib/lib:${LD_LIBRARY_PATH}
endif

setenv PYTHONPATH ${EMAN2DIR}/lib:${EMAN2DIR}/bin
alias sparx sx.py

Set ALLOWTOPICVIEW =

-- DavidStokes - 17 Jun 2015

META FILEATTACHMENT	attachment="install_mpi.py.txt" attr="" comment="install_mpi.py" date="1434579069" name="install_mpi.py.txt" path="install_mpi.py" size="3576" stream="install_mpi.py" user="Main.DavidStokes" version="1"

Revision 117 Jun 2015 - Main.DavidStokes

META TOPICPARENT	name="CemITSystem"

Contents

Installation and Updating of EMAN2

Installation and Updating of EMAN2

Download and untar the latest release from http://blake.bcm.edu/emanwiki/EMAN2/Install/BinaryInstall
go to installation directory (EMAN2) and run the script eman2-installer
If you wish to use mpirun, then need to update that also
- go to pydusa directory and run modified version of install_mpi.py.txt: install_mpi.py (check the name after download)

to setup mpirun
- yum search openmpi (and install packages)
- get pydusa from sparx web site: http://sparx-em.org/sparxwiki/MPI-installation
- use modified version of install_mpi.py.txt: install_mpi.py (check the name after download)
- include following in .cshrc (or type at command line): module add openmpi-x86_64

Set ALLOWTOPICVIEW =

-- DavidStokes - 17 Jun 2015

META FILEATTACHMENT	attachment="install_mpi.py.txt" attr="" comment="install_mpi.py" date="1434579069" name="install_mpi.py.txt" path="install_mpi.py" size="3576" stream="install_mpi.py" user="Main.DavidStokes" version="1"

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