Difference: JeffreyBonanno (1 vs. 8)

Revision 821 Mar 2008 - Main.DavidCowburn

 
META TOPICPARENT name="TWikiUsers" 
Molecular Biophysics
1.   Rao, K.N.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of glycerophosphodiester phosphodiesterase (GDPD) from Agrobacterium tumefaciens by SAD with a large asymmetric unit,” Proteins, 2006, in the press.
2.   Kumaran, D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of phosphatidylglycerophosphatase (PGPase), a putative membrane-bound lipid phosphatase, reveals a novel binuclear metal binding site and two 'proton wires',” Proteins, 2006, in the press.
3.   Eswarmoorthy, S; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Mechanism of action of a flavin-containing monooxygenase (FMO),” Proteins, 2006, in the press.
4.   Rao, K.N.; Kumaran, D.; Seetharaman, J.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal structure of trehalose-6-phosphate phosphatase related protein: biochemical and biological implications,” Proteins, 2006, in the press.
5.   Jayaraman, S; Kumaran, D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of a Putative HTH-Type Transcriptional Regulator yxaF from Bacillus subtilis,” Proteins, 2006, Epub ahead of print February 10.
6.   Jayaraman, S.; Rajashankar, K.R.; Solorzano, V.; Kniewel, R.; Lima, C.D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structures of two putative phosphoheptose isomerases,” Proteins, 2006, Epub ahead of print February 13.
7.   Agarwal, R.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal” Acta Cryst., 2006, D62(4), 383-391.
8.   Bonanno, J.B.; Almo, S.C.; Bresnick, A.; Chance, M.R.; Fiser, A.; Swaminathan, S.; Jiang, J.; Studier, F. W.; Shapiro, L.; Lima, C.D.; Gaasterland, T.M.; Sali, A.; Bain, K.; Feil, I.; Gao, X.; Lorimer, D.; Ramos, A.; Sauder, J.M.; Wasserman, S.; Emtage, S.; D’Amico, K.; Burley, S.K. “A Large Scale Center for the NIH Protein Structure Initiative,” J. Struct. Funct. Genomics, 2005, 6(2-3), 225-232.
9.   Gao, X.; Bain, K.; Bonanno, J.B.; Buchanan, M.; Henderson, D.; Lorimer, D.; Marsh, C.; Reynes, J.A.; Sauder, J.M.; Schwinn, K.; Thai, C.; Burley, S.K. “High-Throughput Limited Proteolysis/Mass Spectrometry for Protein Domain Elucidation,” J. Struct. Funct. Genomics, 2005, 6(2-3), 129-134.
10.   Sickmier, E.A.; Brekasis, D.; Paranawithana, S.; Bonanno, J.B.; Paget, M.S.; Burley, S.K.; Kielkopf, C.L. “X-Ray Structure of a Rex-Family Repressor/NADH Complex Insights into the Mechanism of Redox Sensing,” Structure, 2005, 13(1), 43-54.
11.   Ray, S.S.; Bonanno, J.B.; Chen, H.; Wu, S.; Tomasz, A.; Burley, S.K. “X-ray Structure of a Methanococcus jannaschii DNA-Binding Protein: Implications for Antibiotic Resistance in Staphylococcus aureus,” Proteins, 2003, 50, 170-173.
12.   Burley, S.K.; Bonanno, J.B. “Structural Genomics,” Methods Biochem. Anal., 2003, 44, 591-612.
13.   Pilloff, D.; Dabovic, K.; Romanowski, M.J.; Bonanno, J.B.; Doherty, M.; Burley, S.K.; Leyh, T.S. “The kinetic mechanism of phosphomevalonate kinase,” J. Biol. Chem., 2003, 278(7), 4510-4515.
14.   Burley, S.K.; Bonanno, J.B. “Structuring the Universe of Proteins,” Ann. Rev. Genomics and Hum. Gen., 2002, 3, 243-262.
15.   Ray, S.S.; Bonanno, J.B.; Rajashankar, K.R.; Pinho, M.G.; He, G.; De Lancastre, H.; Tomasz, A.; Burley, S.K. “Co-Crystal Structures of Diaminopimelate Decarboxylase: Mechanism, evolution, and inhibition of an antibiotic resistance factor,” Structure, 2002, 10, 1499-1508.
16.   Burley, S.K.; Bonanno, J.B. “Structural genomics of proteins contributing to conserved biochemical pathways and processes,” Curr. Opin. Struct. Biol., 2002, 12(3), 383-391.
17.   Deaconescu, A.M.; Roll-Mecak, A.; Bonanno, J.B.; Gerchman, S.E.; Kycia, H.; Studier, F.W.; Burley, S.K. “X-ray Structure of S. cerevisiae Homologous Miochondrial Matrix Factor 1 (Hmf1),” Proteins, 2002, 48(2), 431-436.
18.   Romanowski, M.J.; Bonanno, J.B.; Burley, S.K. “Crystal structure of the Streptococcus pneumoniae phosphomevalonate kinase, a member of the GHMP kinase superfamily,” Proteins, 2002, 47(4), 568-571.
19.   Romanowski, M.J.; Bonanno, J.B.; Burley, S.K. “Crystal structure of the Escherichia coli glucose-inhibited division protein B (GidB) reveals a methyltransferase fold,” Proteins, 2002, 47(4), 563-567. 
20.   Chance, M.R.; Bresnick, A.R.; Burley, S.K.; Jiang, J.S.; Lima, C.D.; Sali, A.; Almo, S.C.; Bonanno, J.B.; Buglino, J.A.; Boulton, S.; Chen, H.; Eswar, N.; He, G.; Huang, R.; Ilyin, V.; McMahan, L.; Pieper, U.; Ray, S.; Vidal, M.; Wang, L.K. “Structural genomics: a pipeline for providing structures for the biologist,” Protein Sci. 2002, Apr., 11(4), 723-738.
21.   Bonanno, J.B.; Edo, C.; Narayanan E.; Pieper, U.; Romanowski, M.J.; Ilyin, V.; Gerchman, S.E.; Kycia, H.; Studier, F.W.; Sali, A.; Burley, S.K. “Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis,” Proc. Nat. Acad. Sci. 2001, Nov. 6, 98(23), 12896-12901.
22.   Bonanno, J.B. “Quick Guide: Structural genomics,” Curr. Biol. 1999, Dec., 9(23), R871-R872.
23.   Burley, S.K.; Almo, S.C.; Bonanno, J.B.; Capel, M.; Chance, M.R.; Gaasterland, T.; Lin, D.; Sali, A.; Studier, F.W.; Swaminathan, S. “Structural genomics: beyond the human genome project,” Nat. Genet. 1999, Oct., 23(2), 151-157.
24.   Deo, R.C.; Bonanno, J.B.; Sonenberg, N.; Burley, S.K. “Recognition of polyadenylate RNA by the poly(A)-binding protein,” Cell 1999, Sep. 17; 98(6), 835-845.

Chemistry
25.   Lee, H.; Bonanno, J.B.; Bridgewater, B.M.; Churchill, D.G.; Parkin, G. “Ansa–Titanocene Pyrrolyl Complexes: The Synthesis and Structural Characterization of [Me2Si(C5Me4)2]Ti(NC4H4)X (X = H, Me, Cl and NC4H4) and [Me2Si(C5Me4)(C5Me3CH2)]Ti(NC4H4),” Polyhedron 2005, 24, 1356-1365.
26.   Bonanno, J.B.; Veige, A.S.; Wolczanski, P.T.; Lobkovski, E.B. “Amide derivatives of tantalum and a niobium-promoted ring opening of 3,5-lutidine,” Inorg. Chim. Acta 2003, 345, 173-184.
27.   Trnka, T.M.; Bonanno, J.B.; Bridgewater, B.M.; Parkin, G. “Bis(permethylindenyl) Complexes of Thorium: Synthesis, Structure, and Reactivity,” Organometallics 2001, 20(15), 3255-3264.
28.   Shin, J.H.; Savage, W.; Murphy, V.J.; Bonanno, J.B.; Churchill, D.G.; Parkin, G.  “The syntheses, structures and reactivity of bis(tert-butylcyclopentadienyl)molybdenum derivatives: nitrogen alkylation of an -2-acetonitrile ligand and influence of the chalcogen on the barrier to inversion of chalcogenoether adducts,” J. Chem. Soc., Dalton Trans. 2001, 11, 1732-1753. 
29.   Kimblin, C.; Murphy, V.J.; Hascall, T.; Bridgewater, B.M.; Bonanno, J.B.; Parkin, G. “Structural Studies of the [Tris(imidazolyl)phosphine] Metal Nitrate Complexes {[PimPri,But]M(NO3)}+   (M = Co, Cu, Zn, Cd, Hg): Comparison of Nitrate-Binding Modes in Synthetic Analogues of Carbonic Anhydrase,” Inorg. Chem. 2000, 39(5), 967-974.
30.   Ghosh, P.; Wood, M.; Bonanno, J.B.; Hascall, T.; Parkin, G. “Bis(pyrazolylethyl)thioether ligation to zinc and cadmium: structural characterization of [S(CH2CH2pzMe2)2]ZnCl2, [S(CH2CH2pzMe2)2]CdI2 and [S((CH2CH2pzMe2)2]Cd(NO3)2,” Polyhedron 1999, 18(8,9), 1107-1113.
31.   Lee, H.; Bonanno, J.B.; Hascall, T.; Cordaro, J.; Hahn, J.M.; Parkin, G. “[Me2Si] Ansa bridged complexes of permethyltitanocene: synthesis and structural characterization of fulvene derivatives with trialkylidenemethane character,” Dalton Trans. 1999, 9; 1365-8.
32.   Ghosh, P.; Bonanno, J.B.; Parkin, G. “Synthesis and structure  of [BpBut,Pri]2Co: a bis(pyrazolyl)hydroborato cobalt(II) complex with trans [Co•••H-B] interactions,” Dalton Trans. 1998, 17, 2779-2782.
33.   Kuchta, M.C.; Bonanno, J.B.; Parkin, G. “Monovalent Gallium Complexes Supported by Tris(3,5-di-tert-butylpyrazolyl)hydroborato Ligation: The Syntheses and Structures of [TpBut2]Ga and Its GaI3 Adduct [Tp But2]Ga•GaI3,” J. Am. Chem. Soc. 1996,  118(44),  10914-10915.
34.   Bonanno, J.B.; Henry, T.P.; Neithamer, D.R.; Wolczanski, P.T.; Lobkovsky, E.B. “Aryl Amine C-N Bond Oxidative Addition to (silox)3Ta (silox = tBu3SiO),” J. Am. Chem. Soc. 1996, 118(21), 5132-5133.
35.   Bonanno, J.B.; Wolczanski, P.T.; Lobkovsky, E.B. “Arsinidine, Phosphinidine, and Imide Formation via 1,2-H2-Elimination from (silox)3HTaEHPh   (E = N, P, As): Structures of (silox)3Ta=EPh (E = P, As),” J. Am. Chem. Soc. 1994, 116(24), 11159-11160.
36.   Schaller, C.P.; Bonanno, J.B.; Wolczanski, P.T. “Does Methane Bind to d0 (tBu3SiNH)2Zr=NSitBu3 Prior to C-H Bond Activation?  An Inter vs. Intramolecular Isotope Effect Study,” J. Am. Chem. Soc. 1994, 116(9), 4133-4134.
37.   Sowa, J.R., Jr.; Bonanno, J.B.; Zanotti, V.; Angelici, R.J. “Calorimetric Studies of the Heats of Protonation of the Metal in cis-M(CO)2(bidentate phosphine)2 Complexes of Chromium, Molybdenum, and Tungsten,” Inorg. Chem. 1992, 31(8), 1370-1375.

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Revision 710 May 2007 - Main.DavidCowburn

 
META TOPICPARENT name="TWikiUsers"
  • Name: Jeffrey Bonanno
Changed:
<
<
  • Email: jb383 AT columbia.edu
>
>
Deleted:
<
<		 jeffbonanno@yahoo.com
 
  • Company Name: NYSBC
  • Company URL: http://www.nysbc.org
  • Location: ParkBuildingOffice
  • Country: USA
  • Title: Director of Protein Production
  • External Affiliation: Columbia University College of Medicine - Associate Research Scientist
  • Publications 
Molecular Biophysics
1.   Rao, K.N.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of glycerophosphodiester phosphodiesterase (GDPD) from Agrobacterium tumefaciens by SAD with a large asymmetric unit,” Proteins, 2006, in the press.
2.   Kumaran, D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of phosphatidylglycerophosphatase (PGPase), a putative membrane-bound lipid phosphatase, reveals a novel binuclear metal binding site and two 'proton wires',” Proteins, 2006, in the press.
3.   Eswarmoorthy, S; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Mechanism of action of a flavin-containing monooxygenase (FMO),” Proteins, 2006, in the press.
4.   Rao, K.N.; Kumaran, D.; Seetharaman, J.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal structure of trehalose-6-phosphate phosphatase related protein: biochemical and biological implications,” Proteins, 2006, in the press.
5.   Jayaraman, S; Kumaran, D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of a Putative HTH-Type Transcriptional Regulator yxaF from Bacillus subtilis,” Proteins, 2006, Epub ahead of print February 10.
6.   Jayaraman, S.; Rajashankar, K.R.; Solorzano, V.; Kniewel, R.; Lima, C.D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structures of two putative phosphoheptose isomerases,” Proteins, 2006, Epub ahead of print February 13.
7.   Agarwal, R.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal” Acta Cryst., 2006, D62(4), 383-391.
8.   Bonanno, J.B.; Almo, S.C.; Bresnick, A.; Chance, M.R.; Fiser, A.; Swaminathan, S.; Jiang, J.; Studier, F. W.; Shapiro, L.; Lima, C.D.; Gaasterland, T.M.; Sali, A.; Bain, K.; Feil, I.; Gao, X.; Lorimer, D.; Ramos, A.; Sauder, J.M.; Wasserman, S.; Emtage, S.; D’Amico, K.; Burley, S.K. “A Large Scale Center for the NIH Protein Structure Initiative,” J. Struct. Funct. Genomics, 2005, 6(2-3), 225-232.
9.   Gao, X.; Bain, K.; Bonanno, J.B.; Buchanan, M.; Henderson, D.; Lorimer, D.; Marsh, C.; Reynes, J.A.; Sauder, J.M.; Schwinn, K.; Thai, C.; Burley, S.K. “High-Throughput Limited Proteolysis/Mass Spectrometry for Protein Domain Elucidation,” J. Struct. Funct. Genomics, 2005, 6(2-3), 129-134.
10.   Sickmier, E.A.; Brekasis, D.; Paranawithana, S.; Bonanno, J.B.; Paget, M.S.; Burley, S.K.; Kielkopf, C.L. “X-Ray Structure of a Rex-Family Repressor/NADH Complex Insights into the Mechanism of Redox Sensing,” Structure, 2005, 13(1), 43-54.
11.   Ray, S.S.; Bonanno, J.B.; Chen, H.; Wu, S.; Tomasz, A.; Burley, S.K. “X-ray Structure of a Methanococcus jannaschii DNA-Binding Protein: Implications for Antibiotic Resistance in Staphylococcus aureus,” Proteins, 2003, 50, 170-173.
12.   Burley, S.K.; Bonanno, J.B. “Structural Genomics,” Methods Biochem. Anal., 2003, 44, 591-612.
13.   Pilloff, D.; Dabovic, K.; Romanowski, M.J.; Bonanno, J.B.; Doherty, M.; Burley, S.K.; Leyh, T.S. “The kinetic mechanism of phosphomevalonate kinase,” J. Biol. Chem., 2003, 278(7), 4510-4515.
14.   Burley, S.K.; Bonanno, J.B. “Structuring the Universe of Proteins,” Ann. Rev. Genomics and Hum. Gen., 2002, 3, 243-262.
15.   Ray, S.S.; Bonanno, J.B.; Rajashankar, K.R.; Pinho, M.G.; He, G.; De Lancastre, H.; Tomasz, A.; Burley, S.K. “Co-Crystal Structures of Diaminopimelate Decarboxylase: Mechanism, evolution, and inhibition of an antibiotic resistance factor,” Structure, 2002, 10, 1499-1508.
16.   Burley, S.K.; Bonanno, J.B. “Structural genomics of proteins contributing to conserved biochemical pathways and processes,” Curr. Opin. Struct. Biol., 2002, 12(3), 383-391.
17.   Deaconescu, A.M.; Roll-Mecak, A.; Bonanno, J.B.; Gerchman, S.E.; Kycia, H.; Studier, F.W.; Burley, S.K. “X-ray Structure of S. cerevisiae Homologous Miochondrial Matrix Factor 1 (Hmf1),” Proteins, 2002, 48(2), 431-436.
18.   Romanowski, M.J.; Bonanno, J.B.; Burley, S.K. “Crystal structure of the Streptococcus pneumoniae phosphomevalonate kinase, a member of the GHMP kinase superfamily,” Proteins, 2002, 47(4), 568-571.
19.   Romanowski, M.J.; Bonanno, J.B.; Burley, S.K. “Crystal structure of the Escherichia coli glucose-inhibited division protein B (GidB) reveals a methyltransferase fold,” Proteins, 2002, 47(4), 563-567. 
20.   Chance, M.R.; Bresnick, A.R.; Burley, S.K.; Jiang, J.S.; Lima, C.D.; Sali, A.; Almo, S.C.; Bonanno, J.B.; Buglino, J.A.; Boulton, S.; Chen, H.; Eswar, N.; He, G.; Huang, R.; Ilyin, V.; McMahan, L.; Pieper, U.; Ray, S.; Vidal, M.; Wang, L.K. “Structural genomics: a pipeline for providing structures for the biologist,” Protein Sci. 2002, Apr., 11(4), 723-738.
21.   Bonanno, J.B.; Edo, C.; Narayanan E.; Pieper, U.; Romanowski, M.J.; Ilyin, V.; Gerchman, S.E.; Kycia, H.; Studier, F.W.; Sali, A.; Burley, S.K. “Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis,” Proc. Nat. Acad. Sci. 2001, Nov. 6, 98(23), 12896-12901.
22.   Bonanno, J.B. “Quick Guide: Structural genomics,” Curr. Biol. 1999, Dec., 9(23), R871-R872.
23.   Burley, S.K.; Almo, S.C.; Bonanno, J.B.; Capel, M.; Chance, M.R.; Gaasterland, T.; Lin, D.; Sali, A.; Studier, F.W.; Swaminathan, S. “Structural genomics: beyond the human genome project,” Nat. Genet. 1999, Oct., 23(2), 151-157.
24.   Deo, R.C.; Bonanno, J.B.; Sonenberg, N.; Burley, S.K. “Recognition of polyadenylate RNA by the poly(A)-binding protein,” Cell 1999, Sep. 17; 98(6), 835-845.

Chemistry
25.   Lee, H.; Bonanno, J.B.; Bridgewater, B.M.; Churchill, D.G.; Parkin, G. “Ansa–Titanocene Pyrrolyl Complexes: The Synthesis and Structural Characterization of [Me2Si(C5Me4)2]Ti(NC4H4)X (X = H, Me, Cl and NC4H4) and [Me2Si(C5Me4)(C5Me3CH2)]Ti(NC4H4),” Polyhedron 2005, 24, 1356-1365.
26.   Bonanno, J.B.; Veige, A.S.; Wolczanski, P.T.; Lobkovski, E.B. “Amide derivatives of tantalum and a niobium-promoted ring opening of 3,5-lutidine,” Inorg. Chim. Acta 2003, 345, 173-184.
27.   Trnka, T.M.; Bonanno, J.B.; Bridgewater, B.M.; Parkin, G. “Bis(permethylindenyl) Complexes of Thorium: Synthesis, Structure, and Reactivity,” Organometallics 2001, 20(15), 3255-3264.
28.   Shin, J.H.; Savage, W.; Murphy, V.J.; Bonanno, J.B.; Churchill, D.G.; Parkin, G.  “The syntheses, structures and reactivity of bis(tert-butylcyclopentadienyl)molybdenum derivatives: nitrogen alkylation of an &#61544;-2-acetonitrile ligand and influence of the chalcogen on the barrier to inversion of chalcogenoether adducts,” J. Chem. Soc., Dalton Trans. 2001, 11, 1732-1753. 
29.   Kimblin, C.; Murphy, V.J.; Hascall, T.; Bridgewater, B.M.; Bonanno, J.B.; Parkin, G. “Structural Studies of the [Tris(imidazolyl)phosphine] Metal Nitrate Complexes {[PimPri,But]M(NO3)}+   (M = Co, Cu, Zn, Cd, Hg): Comparison of Nitrate-Binding Modes in Synthetic Analogues of Carbonic Anhydrase,” Inorg. Chem. 2000, 39(5), 967-974.
30.   Ghosh, P.; Wood, M.; Bonanno, J.B.; Hascall, T.; Parkin, G. “Bis(pyrazolylethyl)thioether ligation to zinc and cadmium: structural characterization of [S(CH2CH2pzMe2)2]ZnCl2, [S(CH2CH2pzMe2)2]CdI2 and [S((CH2CH2pzMe2)2]Cd(NO3)2,” Polyhedron 1999, 18(8,9), 1107-1113.
31.   Lee, H.; Bonanno, J.B.; Hascall, T.; Cordaro, J.; Hahn, J.M.; Parkin, G. “[Me2Si] Ansa bridged complexes of permethyltitanocene: synthesis and structural characterization of fulvene derivatives with trialkylidenemethane character,” Dalton Trans. 1999, 9; 1365-8.
32.   Ghosh, P.; Bonanno, J.B.; Parkin, G. “Synthesis and structure  of [BpBut,Pri]2Co: a bis(pyrazolyl)hydroborato cobalt(II) complex with trans [Co•••H-B] interactions,” Dalton Trans. 1998, 17, 2779-2782.
33.   Kuchta, M.C.; Bonanno, J.B.; Parkin, G. “Monovalent Gallium Complexes Supported by Tris(3,5-di-tert-butylpyrazolyl)hydroborato Ligation: The Syntheses and Structures of [TpBut2]Ga and Its GaI3 Adduct [Tp But2]Ga•GaI3,” J. Am. Chem. Soc. 1996,  118(44),  10914-10915.
34.   Bonanno, J.B.; Henry, T.P.; Neithamer, D.R.; Wolczanski, P.T.; Lobkovsky, E.B. “Aryl Amine C-N Bond Oxidative Addition to (silox)3Ta (silox = tBu3SiO),” J. Am. Chem. Soc. 1996, 118(21), 5132-5133.
35.   Bonanno, J.B.; Wolczanski, P.T.; Lobkovsky, E.B. “Arsinidine, Phosphinidine, and Imide Formation via 1,2-H2-Elimination from (silox)3HTaEHPh   (E = N, P, As): Structures of (silox)3Ta=EPh (E = P, As),” J. Am. Chem. Soc. 1994, 116(24), 11159-11160.
36.   Schaller, C.P.; Bonanno, J.B.; Wolczanski, P.T. “Does Methane Bind to d0 (tBu3SiNH)2Zr=NSitBu3 Prior to C-H Bond Activation?  An Inter vs. Intramolecular Isotope Effect Study,” J. Am. Chem. Soc. 1994, 116(9), 4133-4134.
37.   Sowa, J.R., Jr.; Bonanno, J.B.; Zanotti, V.; Angelici, R.J. “Calorimetric Studies of the Heats of Protonation of the Metal in cis-M(CO)2(bidentate phosphine)2 Complexes of Chromium, Molybdenum, and Tungsten,” Inorg. Chem. 1992, 31(8), 1370-1375.

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Related topics

Revision 610 May 2007 - Main.JasperShahn

 
META TOPICPARENT name="TWikiUsers"
  • Name: Jeffrey Bonanno
Changed:
<
<
>
>
  • Email: jb383 AT columbia.edu
  jeffbonanno@yahoo.com
  • Company Name: NYSBC
  • Company URL: http://www.nysbc.org
  • Location: ParkBuildingOffice
  • Country: USA
  • Title: Director of Protein Production
  • External Affiliation: Columbia University College of Medicine - Associate Research Scientist
  • Publications 
Molecular Biophysics
1.   Rao, K.N.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of glycerophosphodiester phosphodiesterase (GDPD) from Agrobacterium tumefaciens by SAD with a large asymmetric unit,” Proteins, 2006, in the press.
2.   Kumaran, D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of phosphatidylglycerophosphatase (PGPase), a putative membrane-bound lipid phosphatase, reveals a novel binuclear metal binding site and two 'proton wires',” Proteins, 2006, in the press.
3.   Eswarmoorthy, S; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Mechanism of action of a flavin-containing monooxygenase (FMO),” Proteins, 2006, in the press.
4.   Rao, K.N.; Kumaran, D.; Seetharaman, J.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal structure of trehalose-6-phosphate phosphatase related protein: biochemical and biological implications,” Proteins, 2006, in the press.
5.   Jayaraman, S; Kumaran, D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of a Putative HTH-Type Transcriptional Regulator yxaF from Bacillus subtilis,” Proteins, 2006, Epub ahead of print February 10.
6.   Jayaraman, S.; Rajashankar, K.R.; Solorzano, V.; Kniewel, R.; Lima, C.D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structures of two putative phosphoheptose isomerases,” Proteins, 2006, Epub ahead of print February 13.
7.   Agarwal, R.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal” Acta Cryst., 2006, D62(4), 383-391.
8.   Bonanno, J.B.; Almo, S.C.; Bresnick, A.; Chance, M.R.; Fiser, A.; Swaminathan, S.; Jiang, J.; Studier, F. W.; Shapiro, L.; Lima, C.D.; Gaasterland, T.M.; Sali, A.; Bain, K.; Feil, I.; Gao, X.; Lorimer, D.; Ramos, A.; Sauder, J.M.; Wasserman, S.; Emtage, S.; D’Amico, K.; Burley, S.K. “A Large Scale Center for the NIH Protein Structure Initiative,” J. Struct. Funct. Genomics, 2005, 6(2-3), 225-232.
9.   Gao, X.; Bain, K.; Bonanno, J.B.; Buchanan, M.; Henderson, D.; Lorimer, D.; Marsh, C.; Reynes, J.A.; Sauder, J.M.; Schwinn, K.; Thai, C.; Burley, S.K. “High-Throughput Limited Proteolysis/Mass Spectrometry for Protein Domain Elucidation,” J. Struct. Funct. Genomics, 2005, 6(2-3), 129-134.
10.   Sickmier, E.A.; Brekasis, D.; Paranawithana, S.; Bonanno, J.B.; Paget, M.S.; Burley, S.K.; Kielkopf, C.L. “X-Ray Structure of a Rex-Family Repressor/NADH Complex Insights into the Mechanism of Redox Sensing,” Structure, 2005, 13(1), 43-54.
11.   Ray, S.S.; Bonanno, J.B.; Chen, H.; Wu, S.; Tomasz, A.; Burley, S.K. “X-ray Structure of a Methanococcus jannaschii DNA-Binding Protein: Implications for Antibiotic Resistance in Staphylococcus aureus,” Proteins, 2003, 50, 170-173.
12.   Burley, S.K.; Bonanno, J.B. “Structural Genomics,” Methods Biochem. Anal., 2003, 44, 591-612.
13.   Pilloff, D.; Dabovic, K.; Romanowski, M.J.; Bonanno, J.B.; Doherty, M.; Burley, S.K.; Leyh, T.S. “The kinetic mechanism of phosphomevalonate kinase,” J. Biol. Chem., 2003, 278(7), 4510-4515.
14.   Burley, S.K.; Bonanno, J.B. “Structuring the Universe of Proteins,” Ann. Rev. Genomics and Hum. Gen., 2002, 3, 243-262.
15.   Ray, S.S.; Bonanno, J.B.; Rajashankar, K.R.; Pinho, M.G.; He, G.; De Lancastre, H.; Tomasz, A.; Burley, S.K. “Co-Crystal Structures of Diaminopimelate Decarboxylase: Mechanism, evolution, and inhibition of an antibiotic resistance factor,” Structure, 2002, 10, 1499-1508.
16.   Burley, S.K.; Bonanno, J.B. “Structural genomics of proteins contributing to conserved biochemical pathways and processes,” Curr. Opin. Struct. Biol., 2002, 12(3), 383-391.
17.   Deaconescu, A.M.; Roll-Mecak, A.; Bonanno, J.B.; Gerchman, S.E.; Kycia, H.; Studier, F.W.; Burley, S.K. “X-ray Structure of S. cerevisiae Homologous Miochondrial Matrix Factor 1 (Hmf1),” Proteins, 2002, 48(2), 431-436.
18.   Romanowski, M.J.; Bonanno, J.B.; Burley, S.K. “Crystal structure of the Streptococcus pneumoniae phosphomevalonate kinase, a member of the GHMP kinase superfamily,” Proteins, 2002, 47(4), 568-571.
19.   Romanowski, M.J.; Bonanno, J.B.; Burley, S.K. “Crystal structure of the Escherichia coli glucose-inhibited division protein B (GidB) reveals a methyltransferase fold,” Proteins, 2002, 47(4), 563-567. 
20.   Chance, M.R.; Bresnick, A.R.; Burley, S.K.; Jiang, J.S.; Lima, C.D.; Sali, A.; Almo, S.C.; Bonanno, J.B.; Buglino, J.A.; Boulton, S.; Chen, H.; Eswar, N.; He, G.; Huang, R.; Ilyin, V.; McMahan, L.; Pieper, U.; Ray, S.; Vidal, M.; Wang, L.K. “Structural genomics: a pipeline for providing structures for the biologist,” Protein Sci. 2002, Apr., 11(4), 723-738.
21.   Bonanno, J.B.; Edo, C.; Narayanan E.; Pieper, U.; Romanowski, M.J.; Ilyin, V.; Gerchman, S.E.; Kycia, H.; Studier, F.W.; Sali, A.; Burley, S.K. “Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis,” Proc. Nat. Acad. Sci. 2001, Nov. 6, 98(23), 12896-12901.
22.   Bonanno, J.B. “Quick Guide: Structural genomics,” Curr. Biol. 1999, Dec., 9(23), R871-R872.
23.   Burley, S.K.; Almo, S.C.; Bonanno, J.B.; Capel, M.; Chance, M.R.; Gaasterland, T.; Lin, D.; Sali, A.; Studier, F.W.; Swaminathan, S. “Structural genomics: beyond the human genome project,” Nat. Genet. 1999, Oct., 23(2), 151-157.
24.   Deo, R.C.; Bonanno, J.B.; Sonenberg, N.; Burley, S.K. “Recognition of polyadenylate RNA by the poly(A)-binding protein,” Cell 1999, Sep. 17; 98(6), 835-845.

Chemistry
25.   Lee, H.; Bonanno, J.B.; Bridgewater, B.M.; Churchill, D.G.; Parkin, G. “Ansa–Titanocene Pyrrolyl Complexes: The Synthesis and Structural Characterization of [Me2Si(C5Me4)2]Ti(NC4H4)X (X = H, Me, Cl and NC4H4) and [Me2Si(C5Me4)(C5Me3CH2)]Ti(NC4H4),” Polyhedron 2005, 24, 1356-1365.
26.   Bonanno, J.B.; Veige, A.S.; Wolczanski, P.T.; Lobkovski, E.B. “Amide derivatives of tantalum and a niobium-promoted ring opening of 3,5-lutidine,” Inorg. Chim. Acta 2003, 345, 173-184.
27.   Trnka, T.M.; Bonanno, J.B.; Bridgewater, B.M.; Parkin, G. “Bis(permethylindenyl) Complexes of Thorium: Synthesis, Structure, and Reactivity,” Organometallics 2001, 20(15), 3255-3264.
28.   Shin, J.H.; Savage, W.; Murphy, V.J.; Bonanno, J.B.; Churchill, D.G.; Parkin, G.  “The syntheses, structures and reactivity of bis(tert-butylcyclopentadienyl)molybdenum derivatives: nitrogen alkylation of an &#61544;-2-acetonitrile ligand and influence of the chalcogen on the barrier to inversion of chalcogenoether adducts,” J. Chem. Soc., Dalton Trans. 2001, 11, 1732-1753. 
29.   Kimblin, C.; Murphy, V.J.; Hascall, T.; Bridgewater, B.M.; Bonanno, J.B.; Parkin, G. “Structural Studies of the [Tris(imidazolyl)phosphine] Metal Nitrate Complexes {[PimPri,But]M(NO3)}+   (M = Co, Cu, Zn, Cd, Hg): Comparison of Nitrate-Binding Modes in Synthetic Analogues of Carbonic Anhydrase,” Inorg. Chem. 2000, 39(5), 967-974.
30.   Ghosh, P.; Wood, M.; Bonanno, J.B.; Hascall, T.; Parkin, G. “Bis(pyrazolylethyl)thioether ligation to zinc and cadmium: structural characterization of [S(CH2CH2pzMe2)2]ZnCl2, [S(CH2CH2pzMe2)2]CdI2 and [S((CH2CH2pzMe2)2]Cd(NO3)2,” Polyhedron 1999, 18(8,9), 1107-1113.
31.   Lee, H.; Bonanno, J.B.; Hascall, T.; Cordaro, J.; Hahn, J.M.; Parkin, G. “[Me2Si] Ansa bridged complexes of permethyltitanocene: synthesis and structural characterization of fulvene derivatives with trialkylidenemethane character,” Dalton Trans. 1999, 9; 1365-8.
32.   Ghosh, P.; Bonanno, J.B.; Parkin, G. “Synthesis and structure  of [BpBut,Pri]2Co: a bis(pyrazolyl)hydroborato cobalt(II) complex with trans [Co•••H-B] interactions,” Dalton Trans. 1998, 17, 2779-2782.
33.   Kuchta, M.C.; Bonanno, J.B.; Parkin, G. “Monovalent Gallium Complexes Supported by Tris(3,5-di-tert-butylpyrazolyl)hydroborato Ligation: The Syntheses and Structures of [TpBut2]Ga and Its GaI3 Adduct [Tp But2]Ga•GaI3,” J. Am. Chem. Soc. 1996,  118(44),  10914-10915.
34.   Bonanno, J.B.; Henry, T.P.; Neithamer, D.R.; Wolczanski, P.T.; Lobkovsky, E.B. “Aryl Amine C-N Bond Oxidative Addition to (silox)3Ta (silox = tBu3SiO),” J. Am. Chem. Soc. 1996, 118(21), 5132-5133.
35.   Bonanno, J.B.; Wolczanski, P.T.; Lobkovsky, E.B. “Arsinidine, Phosphinidine, and Imide Formation via 1,2-H2-Elimination from (silox)3HTaEHPh   (E = N, P, As): Structures of (silox)3Ta=EPh (E = P, As),” J. Am. Chem. Soc. 1994, 116(24), 11159-11160.
36.   Schaller, C.P.; Bonanno, J.B.; Wolczanski, P.T. “Does Methane Bind to d0 (tBu3SiNH)2Zr=NSitBu3 Prior to C-H Bond Activation?  An Inter vs. Intramolecular Isotope Effect Study,” J. Am. Chem. Soc. 1994, 116(9), 4133-4134.
37.   Sowa, J.R., Jr.; Bonanno, J.B.; Zanotti, V.; Angelici, R.J. “Calorimetric Studies of the Heats of Protonation of the Metal in cis-M(CO)2(bidentate phosphine)2 Complexes of Chromium, Molybdenum, and Tungsten,” Inorg. Chem. 1992, 31(8), 1370-1375.

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Revision 504 Jan 2007 - Main.DavidCowburn

 
META TOPICPARENT name="TWikiUsers"
  • Name: Jeffrey Bonanno
Changed:
<
<
>
>
Deleted:
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<		 jb383@columbia.edu
  jeffbonanno@yahoo.com
  • Company Name: NYSBC
  • Company URL: http://www.nysbc.org
  • Location: ParkBuildingOffice
  • Country: USA
  • Title: Director of Protein Production
  • External Affiliation: Columbia University College of Medicine - Associate Research Scientist
  • Publications 
Molecular Biophysics
1.   Rao, K.N.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of glycerophosphodiester phosphodiesterase (GDPD) from Agrobacterium tumefaciens by SAD with a large asymmetric unit,” Proteins, 2006, in the press.
2.   Kumaran, D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of phosphatidylglycerophosphatase (PGPase), a putative membrane-bound lipid phosphatase, reveals a novel binuclear metal binding site and two 'proton wires',” Proteins, 2006, in the press.
3.   Eswarmoorthy, S; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Mechanism of action of a flavin-containing monooxygenase (FMO),” Proteins, 2006, in the press.
4.   Rao, K.N.; Kumaran, D.; Seetharaman, J.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal structure of trehalose-6-phosphate phosphatase related protein: biochemical and biological implications,” Proteins, 2006, in the press.
5.   Jayaraman, S; Kumaran, D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of a Putative HTH-Type Transcriptional Regulator yxaF from Bacillus subtilis,” Proteins, 2006, Epub ahead of print February 10.
6.   Jayaraman, S.; Rajashankar, K.R.; Solorzano, V.; Kniewel, R.; Lima, C.D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structures of two putative phosphoheptose isomerases,” Proteins, 2006, Epub ahead of print February 13.
7.   Agarwal, R.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal” Acta Cryst., 2006, D62(4), 383-391.
8.   Bonanno, J.B.; Almo, S.C.; Bresnick, A.; Chance, M.R.; Fiser, A.; Swaminathan, S.; Jiang, J.; Studier, F. W.; Shapiro, L.; Lima, C.D.; Gaasterland, T.M.; Sali, A.; Bain, K.; Feil, I.; Gao, X.; Lorimer, D.; Ramos, A.; Sauder, J.M.; Wasserman, S.; Emtage, S.; D’Amico, K.; Burley, S.K. “A Large Scale Center for the NIH Protein Structure Initiative,” J. Struct. Funct. Genomics, 2005, 6(2-3), 225-232.
9.   Gao, X.; Bain, K.; Bonanno, J.B.; Buchanan, M.; Henderson, D.; Lorimer, D.; Marsh, C.; Reynes, J.A.; Sauder, J.M.; Schwinn, K.; Thai, C.; Burley, S.K. “High-Throughput Limited Proteolysis/Mass Spectrometry for Protein Domain Elucidation,” J. Struct. Funct. Genomics, 2005, 6(2-3), 129-134.
10.   Sickmier, E.A.; Brekasis, D.; Paranawithana, S.; Bonanno, J.B.; Paget, M.S.; Burley, S.K.; Kielkopf, C.L. “X-Ray Structure of a Rex-Family Repressor/NADH Complex Insights into the Mechanism of Redox Sensing,” Structure, 2005, 13(1), 43-54.
11.   Ray, S.S.; Bonanno, J.B.; Chen, H.; Wu, S.; Tomasz, A.; Burley, S.K. “X-ray Structure of a Methanococcus jannaschii DNA-Binding Protein: Implications for Antibiotic Resistance in Staphylococcus aureus,” Proteins, 2003, 50, 170-173.
12.   Burley, S.K.; Bonanno, J.B. “Structural Genomics,” Methods Biochem. Anal., 2003, 44, 591-612.
13.   Pilloff, D.; Dabovic, K.; Romanowski, M.J.; Bonanno, J.B.; Doherty, M.; Burley, S.K.; Leyh, T.S. “The kinetic mechanism of phosphomevalonate kinase,” J. Biol. Chem., 2003, 278(7), 4510-4515.
14.   Burley, S.K.; Bonanno, J.B. “Structuring the Universe of Proteins,” Ann. Rev. Genomics and Hum. Gen., 2002, 3, 243-262.
15.   Ray, S.S.; Bonanno, J.B.; Rajashankar, K.R.; Pinho, M.G.; He, G.; De Lancastre, H.; Tomasz, A.; Burley, S.K. “Co-Crystal Structures of Diaminopimelate Decarboxylase: Mechanism, evolution, and inhibition of an antibiotic resistance factor,” Structure, 2002, 10, 1499-1508.
16.   Burley, S.K.; Bonanno, J.B. “Structural genomics of proteins contributing to conserved biochemical pathways and processes,” Curr. Opin. Struct. Biol., 2002, 12(3), 383-391.
17.   Deaconescu, A.M.; Roll-Mecak, A.; Bonanno, J.B.; Gerchman, S.E.; Kycia, H.; Studier, F.W.; Burley, S.K. “X-ray Structure of S. cerevisiae Homologous Miochondrial Matrix Factor 1 (Hmf1),” Proteins, 2002, 48(2), 431-436.
18.   Romanowski, M.J.; Bonanno, J.B.; Burley, S.K. “Crystal structure of the Streptococcus pneumoniae phosphomevalonate kinase, a member of the GHMP kinase superfamily,” Proteins, 2002, 47(4), 568-571.
19.   Romanowski, M.J.; Bonanno, J.B.; Burley, S.K. “Crystal structure of the Escherichia coli glucose-inhibited division protein B (GidB) reveals a methyltransferase fold,” Proteins, 2002, 47(4), 563-567. 
20.   Chance, M.R.; Bresnick, A.R.; Burley, S.K.; Jiang, J.S.; Lima, C.D.; Sali, A.; Almo, S.C.; Bonanno, J.B.; Buglino, J.A.; Boulton, S.; Chen, H.; Eswar, N.; He, G.; Huang, R.; Ilyin, V.; McMahan, L.; Pieper, U.; Ray, S.; Vidal, M.; Wang, L.K. “Structural genomics: a pipeline for providing structures for the biologist,” Protein Sci. 2002, Apr., 11(4), 723-738.
21.   Bonanno, J.B.; Edo, C.; Narayanan E.; Pieper, U.; Romanowski, M.J.; Ilyin, V.; Gerchman, S.E.; Kycia, H.; Studier, F.W.; Sali, A.; Burley, S.K. “Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis,” Proc. Nat. Acad. Sci. 2001, Nov. 6, 98(23), 12896-12901.
22.   Bonanno, J.B. “Quick Guide: Structural genomics,” Curr. Biol. 1999, Dec., 9(23), R871-R872.
23.   Burley, S.K.; Almo, S.C.; Bonanno, J.B.; Capel, M.; Chance, M.R.; Gaasterland, T.; Lin, D.; Sali, A.; Studier, F.W.; Swaminathan, S. “Structural genomics: beyond the human genome project,” Nat. Genet. 1999, Oct., 23(2), 151-157.
24.   Deo, R.C.; Bonanno, J.B.; Sonenberg, N.; Burley, S.K. “Recognition of polyadenylate RNA by the poly(A)-binding protein,” Cell 1999, Sep. 17; 98(6), 835-845.

Chemistry
25.   Lee, H.; Bonanno, J.B.; Bridgewater, B.M.; Churchill, D.G.; Parkin, G. “Ansa–Titanocene Pyrrolyl Complexes: The Synthesis and Structural Characterization of [Me2Si(C5Me4)2]Ti(NC4H4)X (X = H, Me, Cl and NC4H4) and [Me2Si(C5Me4)(C5Me3CH2)]Ti(NC4H4),” Polyhedron 2005, 24, 1356-1365.
26.   Bonanno, J.B.; Veige, A.S.; Wolczanski, P.T.; Lobkovski, E.B. “Amide derivatives of tantalum and a niobium-promoted ring opening of 3,5-lutidine,” Inorg. Chim. Acta 2003, 345, 173-184.
27.   Trnka, T.M.; Bonanno, J.B.; Bridgewater, B.M.; Parkin, G. “Bis(permethylindenyl) Complexes of Thorium: Synthesis, Structure, and Reactivity,” Organometallics 2001, 20(15), 3255-3264.
28.   Shin, J.H.; Savage, W.; Murphy, V.J.; Bonanno, J.B.; Churchill, D.G.; Parkin, G.  “The syntheses, structures and reactivity of bis(tert-butylcyclopentadienyl)molybdenum derivatives: nitrogen alkylation of an &#61544;-2-acetonitrile ligand and influence of the chalcogen on the barrier to inversion of chalcogenoether adducts,” J. Chem. Soc., Dalton Trans. 2001, 11, 1732-1753. 
29.   Kimblin, C.; Murphy, V.J.; Hascall, T.; Bridgewater, B.M.; Bonanno, J.B.; Parkin, G. “Structural Studies of the [Tris(imidazolyl)phosphine] Metal Nitrate Complexes {[PimPri,But]M(NO3)}+   (M = Co, Cu, Zn, Cd, Hg): Comparison of Nitrate-Binding Modes in Synthetic Analogues of Carbonic Anhydrase,” Inorg. Chem. 2000, 39(5), 967-974.
30.   Ghosh, P.; Wood, M.; Bonanno, J.B.; Hascall, T.; Parkin, G. “Bis(pyrazolylethyl)thioether ligation to zinc and cadmium: structural characterization of [S(CH2CH2pzMe2)2]ZnCl2, [S(CH2CH2pzMe2)2]CdI2 and [S((CH2CH2pzMe2)2]Cd(NO3)2,” Polyhedron 1999, 18(8,9), 1107-1113.
31.   Lee, H.; Bonanno, J.B.; Hascall, T.; Cordaro, J.; Hahn, J.M.; Parkin, G. “[Me2Si] Ansa bridged complexes of permethyltitanocene: synthesis and structural characterization of fulvene derivatives with trialkylidenemethane character,” Dalton Trans. 1999, 9; 1365-8.
32.   Ghosh, P.; Bonanno, J.B.; Parkin, G. “Synthesis and structure  of [BpBut,Pri]2Co: a bis(pyrazolyl)hydroborato cobalt(II) complex with trans [Co•••H-B] interactions,” Dalton Trans. 1998, 17, 2779-2782.
33.   Kuchta, M.C.; Bonanno, J.B.; Parkin, G. “Monovalent Gallium Complexes Supported by Tris(3,5-di-tert-butylpyrazolyl)hydroborato Ligation: The Syntheses and Structures of [TpBut2]Ga and Its GaI3 Adduct [Tp But2]Ga•GaI3,” J. Am. Chem. Soc. 1996,  118(44),  10914-10915.
34.   Bonanno, J.B.; Henry, T.P.; Neithamer, D.R.; Wolczanski, P.T.; Lobkovsky, E.B. “Aryl Amine C-N Bond Oxidative Addition to (silox)3Ta (silox = tBu3SiO),” J. Am. Chem. Soc. 1996, 118(21), 5132-5133.
35.   Bonanno, J.B.; Wolczanski, P.T.; Lobkovsky, E.B. “Arsinidine, Phosphinidine, and Imide Formation via 1,2-H2-Elimination from (silox)3HTaEHPh   (E = N, P, As): Structures of (silox)3Ta=EPh (E = P, As),” J. Am. Chem. Soc. 1994, 116(24), 11159-11160.
36.   Schaller, C.P.; Bonanno, J.B.; Wolczanski, P.T. “Does Methane Bind to d0 (tBu3SiNH)2Zr=NSitBu3 Prior to C-H Bond Activation?  An Inter vs. Intramolecular Isotope Effect Study,” J. Am. Chem. Soc. 1994, 116(9), 4133-4134.
37.   Sowa, J.R., Jr.; Bonanno, J.B.; Zanotti, V.; Angelici, R.J. “Calorimetric Studies of the Heats of Protonation of the Metal in cis-M(CO)2(bidentate phosphine)2 Complexes of Chromium, Molybdenum, and Tungsten,” Inorg. Chem. 1992, 31(8), 1370-1375.

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Related topics

Revision 421 Jun 2006 - Main.JeffreyBonanno

 
META TOPICPARENT name="TWikiUsers"
Changed:
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Molecular Biophysics
1.   Rao, K.N.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of glycerophosphodiester phosphodiesterase (GDPD) from Agrobacterium tumefaciens by SAD with a large asymmetric unit,” Proteins, 2006, in the press.
2.   Kumaran, D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of phosphatidylglycerophosphatase (PGPase), a putative membrane-bound lipid phosphatase, reveals a novel binuclear metal binding site and two 'proton wires',” Proteins, 2006, in the press.
3.   Eswarmoorthy, S; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Mechanism of action of a flavin-containing monooxygenase (FMO),” Proteins, 2006, in the press.
4.   Rao, K.N.; Kumaran, D.; Seetharaman, J.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal structure of trehalose-6-phosphate phosphatase related protein: biochemical and biological implications,” Proteins, 2006, in the press.
5.   Jayaraman, S; Kumaran, D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of a Putative HTH-Type Transcriptional Regulator yxaF from Bacillus subtilis,” Proteins, 2006, Epub ahead of print February 10.
6.   Jayaraman, S.; Rajashankar, K.R.; Solorzano, V.; Kniewel, R.; Lima, C.D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structures of two putative phosphoheptose isomerases,” Proteins, 2006, Epub ahead of print February 13.
7.   Agarwal, R.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal” Acta Cryst., 2006, D62(4), 383-391.
8.   Bonanno, J.B.; Almo, S.C.; Bresnick, A.; Chance, M.R.; Fiser, A.; Swaminathan, S.; Jiang, J.; Studier, F. W.; Shapiro, L.; Lima, C.D.; Gaasterland, T.M.; Sali, A.; Bain, K.; Feil, I.; Gao, X.; Lorimer, D.; Ramos, A.; Sauder, J.M.; Wasserman, S.; Emtage, S.; D’Amico, K.; Burley, S.K. “A Large Scale Center for the NIH Protein Structure Initiative,” J. Struct. Funct. Genomics, 2005, 6(2-3), 225-232.
9.   Gao, X.; Bain, K.; Bonanno, J.B.; Buchanan, M.; Henderson, D.; Lorimer, D.; Marsh, C.; Reynes, J.A.; Sauder, J.M.; Schwinn, K.; Thai, C.; Burley, S.K. “High-Throughput Limited Proteolysis/Mass Spectrometry for Protein Domain Elucidation,” J. Struct. Funct. Genomics, 2005, 6(2-3), 129-134.
10.   Sickmier, E.A.; Brekasis, D.; Paranawithana, S.; Bonanno, J.B.; Paget, M.S.; Burley, S.K.; Kielkopf, C.L. “X-Ray Structure of a Rex-Family Repressor/NADH Complex Insights into the Mechanism of Redox Sensing,” Structure, 2005, 13(1), 43-54.
11.   Ray, S.S.; Bonanno, J.B.; Chen, H.; Wu, S.; Tomasz, A.; Burley, S.K. “X-ray Structure of a Methanococcus jannaschii DNA-Binding Protein: Implications for Antibiotic Resistance in Staphylococcus aureus,” Proteins, 2003, 50, 170-173.
12.   Burley, S.K.; Bonanno, J.B. “Structural Genomics,” Methods Biochem. Anal., 2003, 44, 591-612.
13.   Pilloff, D.; Dabovic, K.; Romanowski, M.J.; Bonanno, J.B.; Doherty, M.; Burley, S.K.; Leyh, T.S. “The kinetic mechanism of phosphomevalonate kinase,” J. Biol. Chem., 2003, 278(7), 4510-4515.
14.   Burley, S.K.; Bonanno, J.B. “Structuring the Universe of Proteins,” Ann. Rev. Genomics and Hum. Gen., 2002, 3, 243-262.
15.   Ray, S.S.; Bonanno, J.B.; Rajashankar, K.R.; Pinho, M.G.; He, G.; De Lancastre, H.; Tomasz, A.; Burley, S.K. “Co-Crystal Structures of Diaminopimelate Decarboxylase: Mechanism, evolution, and inhibition of an antibiotic resistance factor,” Structure, 2002, 10, 1499-1508.
16.   Burley, S.K.; Bonanno, J.B. “Structural genomics of proteins contributing to conserved biochemical pathways and processes,” Curr. Opin. Struct. Biol., 2002, 12(3), 383-391.
17.   Deaconescu, A.M.; Roll-Mecak, A.; Bonanno, J.B.; Gerchman, S.E.; Kycia, H.; Studier, F.W.; Burley, S.K. “X-ray Structure of S. cerevisiae Homologous Miochondrial Matrix Factor 1 (Hmf1),” Proteins, 2002, 48(2), 431-436.
18.   Romanowski, M.J.; Bonanno, J.B.; Burley, S.K. “Crystal structure of the Streptococcus pneumoniae phosphomevalonate kinase, a member of the GHMP kinase superfamily,” Proteins, 2002, 47(4), 568-571.
19.   Romanowski, M.J.; Bonanno, J.B.; Burley, S.K. “Crystal structure of the Escherichia coli glucose-inhibited division protein B (GidB) reveals a methyltransferase fold,” Proteins, 2002, 47(4), 563-567. 
20.   Chance, M.R.; Bresnick, A.R.; Burley, S.K.; Jiang, J.S.; Lima, C.D.; Sali, A.; Almo, S.C.; Bonanno, J.B.; Buglino, J.A.; Boulton, S.; Chen, H.; Eswar, N.; He, G.; Huang, R.; Ilyin, V.; McMahan, L.; Pieper, U.; Ray, S.; Vidal, M.; Wang, L.K. “Structural genomics: a pipeline for providing structures for the biologist,” Protein Sci. 2002, Apr., 11(4), 723-738.
21.   Bonanno, J.B.; Edo, C.; Narayanan E.; Pieper, U.; Romanowski, M.J.; Ilyin, V.; Gerchman, S.E.; Kycia, H.; Studier, F.W.; Sali, A.; Burley, S.K. “Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis,” Proc. Nat. Acad. Sci. 2001, Nov. 6, 98(23), 12896-12901.
22.   Bonanno, J.B. “Quick Guide: Structural genomics,” Curr. Biol. 1999, Dec., 9(23), R871-R872.
23.   Burley, S.K.; Almo, S.C.; Bonanno, J.B.; Capel, M.; Chance, M.R.; Gaasterland, T.; Lin, D.; Sali, A.; Studier, F.W.; Swaminathan, S. “Structural genomics: beyond the human genome project,” Nat. Genet. 1999, Oct., 23(2), 151-157.
24.   Deo, R.C.; Bonanno, J.B.; Sonenberg, N.; Burley, S.K. “Recognition of polyadenylate RNA by the poly(A)-binding protein,” Cell 1999, Sep. 17; 98(6), 835-845.

Chemistry
25.   Lee, H.; Bonanno, J.B.; Bridgewater, B.M.; Churchill, D.G.; Parkin, G. “Ansa–Titanocene Pyrrolyl Complexes: The Synthesis and Structural Characterization of [Me2Si(C5Me4)2]Ti(NC4H4)X (X = H, Me, Cl and NC4H4) and [Me2Si(C5Me4)(C5Me3CH2)]Ti(NC4H4),” Polyhedron 2005, 24, 1356-1365.
26.   Bonanno, J.B.; Veige, A.S.; Wolczanski, P.T.; Lobkovski, E.B. “Amide derivatives of tantalum and a niobium-promoted ring opening of 3,5-lutidine,” Inorg. Chim. Acta 2003, 345, 173-184.
27.   Trnka, T.M.; Bonanno, J.B.; Bridgewater, B.M.; Parkin, G. “Bis(permethylindenyl) Complexes of Thorium: Synthesis, Structure, and Reactivity,” Organometallics 2001, 20(15), 3255-3264.
28.   Shin, J.H.; Savage, W.; Murphy, V.J.; Bonanno, J.B.; Churchill, D.G.; Parkin, G.  “The syntheses, structures and reactivity of bis(tert-butylcyclopentadienyl)molybdenum derivatives: nitrogen alkylation of an &#61544;-2-acetonitrile ligand and influence of the chalcogen on the barrier to inversion of chalcogenoether adducts,” J. Chem. Soc., Dalton Trans. 2001, 11, 1732-1753. 
29.   Kimblin, C.; Murphy, V.J.; Hascall, T.; Bridgewater, B.M.; Bonanno, J.B.; Parkin, G. “Structural Studies of the [Tris(imidazolyl)phosphine] Metal Nitrate Complexes {[PimPri,But]M(NO3)}+   (M = Co, Cu, Zn, Cd, Hg): Comparison of Nitrate-Binding Modes in Synthetic Analogues of Carbonic Anhydrase,” Inorg. Chem. 2000, 39(5), 967-974.
30.   Ghosh, P.; Wood, M.; Bonanno, J.B.; Hascall, T.; Parkin, G. “Bis(pyrazolylethyl)thioether ligation to zinc and cadmium: structural characterization of [S(CH2CH2pzMe2)2]ZnCl2, [S(CH2CH2pzMe2)2]CdI2 and [S((CH2CH2pzMe2)2]Cd(NO3)2,” Polyhedron 1999, 18(8,9), 1107-1113.
31.   Lee, H.; Bonanno, J.B.; Hascall, T.; Cordaro, J.; Hahn, J.M.; Parkin, G. “[Me2Si] Ansa bridged complexes of permethyltitanocene: synthesis and structural characterization of fulvene derivatives with trialkylidenemethane character,” Dalton Trans. 1999, 9; 1365-8.
32.   Ghosh, P.; Bonanno, J.B.; Parkin, G. “Synthesis and structure  of [BpBut,Pri]2Co: a bis(pyrazolyl)hydroborato cobalt(II) complex with trans [Co•••H-B] interactions,” Dalton Trans. 1998, 17, 2779-2782.
33.   Kuchta, M.C.; Bonanno, J.B.; Parkin, G. “Monovalent Gallium Complexes Supported by Tris(3,5-di-tert-butylpyrazolyl)hydroborato Ligation: The Syntheses and Structures of [TpBut2]Ga and Its GaI3 Adduct [Tp But2]Ga•GaI3,” J. Am. Chem. Soc. 1996,  118(44),  10914-10915.
34.   Bonanno, J.B.; Henry, T.P.; Neithamer, D.R.; Wolczanski, P.T.; Lobkovsky, E.B. “Aryl Amine C-N Bond Oxidative Addition to (silox)3Ta (silox = tBu3SiO),” J. Am. Chem. Soc. 1996, 118(21), 5132-5133.
35.   Bonanno, J.B.; Wolczanski, P.T.; Lobkovsky, E.B. “Arsinidine, Phosphinidine, and Imide Formation via 1,2-H2-Elimination from (silox)3HTaEHPh   (E = N, P, As): Structures of (silox)3Ta=EPh (E = P, As),” J. Am. Chem. Soc. 1994, 116(24), 11159-11160.
36.   Schaller, C.P.; Bonanno, J.B.; Wolczanski, P.T. “Does Methane Bind to d0 (tBu3SiNH)2Zr=NSitBu3 Prior to C-H Bond Activation?  An Inter vs. Intramolecular Isotope Effect Study,” J. Am. Chem. Soc. 1994, 116(9), 4133-4134.
37.   Sowa, J.R., Jr.; Bonanno, J.B.; Zanotti, V.; Angelici, R.J. “Calorimetric Studies of the Heats of Protonation of the Metal in cis-M(CO)2(bidentate phosphine)2 Complexes of Chromium, Molybdenum, and Tungsten,” Inorg. Chem. 1992, 31(8), 1370-1375.

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Related topics

>
>		 
Molecular Biophysics
1.   Rao, K.N.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of glycerophosphodiester phosphodiesterase (GDPD) from Agrobacterium tumefaciens by SAD with a large asymmetric unit,” Proteins, 2006, in the press.
2.   Kumaran, D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of phosphatidylglycerophosphatase (PGPase), a putative membrane-bound lipid phosphatase, reveals a novel binuclear metal binding site and two 'proton wires',” Proteins, 2006, in the press.
3.   Eswarmoorthy, S; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Mechanism of action of a flavin-containing monooxygenase (FMO),” Proteins, 2006, in the press.
4.   Rao, K.N.; Kumaran, D.; Seetharaman, J.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal structure of trehalose-6-phosphate phosphatase related protein: biochemical and biological implications,” Proteins, 2006, in the press.
5.   Jayaraman, S; Kumaran, D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of a Putative HTH-Type Transcriptional Regulator yxaF from Bacillus subtilis,” Proteins, 2006, Epub ahead of print February 10.
6.   Jayaraman, S.; Rajashankar, K.R.; Solorzano, V.; Kniewel, R.; Lima, C.D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structures of two putative phosphoheptose isomerases,” Proteins, 2006, Epub ahead of print February 13.
7.   Agarwal, R.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal” Acta Cryst., 2006, D62(4), 383-391.
8.   Bonanno, J.B.; Almo, S.C.; Bresnick, A.; Chance, M.R.; Fiser, A.; Swaminathan, S.; Jiang, J.; Studier, F. W.; Shapiro, L.; Lima, C.D.; Gaasterland, T.M.; Sali, A.; Bain, K.; Feil, I.; Gao, X.; Lorimer, D.; Ramos, A.; Sauder, J.M.; Wasserman, S.; Emtage, S.; D’Amico, K.; Burley, S.K. “A Large Scale Center for the NIH Protein Structure Initiative,” J. Struct. Funct. Genomics, 2005, 6(2-3), 225-232.
9.   Gao, X.; Bain, K.; Bonanno, J.B.; Buchanan, M.; Henderson, D.; Lorimer, D.; Marsh, C.; Reynes, J.A.; Sauder, J.M.; Schwinn, K.; Thai, C.; Burley, S.K. “High-Throughput Limited Proteolysis/Mass Spectrometry for Protein Domain Elucidation,” J. Struct. Funct. Genomics, 2005, 6(2-3), 129-134.
10.   Sickmier, E.A.; Brekasis, D.; Paranawithana, S.; Bonanno, J.B.; Paget, M.S.; Burley, S.K.; Kielkopf, C.L. “X-Ray Structure of a Rex-Family Repressor/NADH Complex Insights into the Mechanism of Redox Sensing,” Structure, 2005, 13(1), 43-54.
11.   Ray, S.S.; Bonanno, J.B.; Chen, H.; Wu, S.; Tomasz, A.; Burley, S.K. “X-ray Structure of a Methanococcus jannaschii DNA-Binding Protein: Implications for Antibiotic Resistance in Staphylococcus aureus,” Proteins, 2003, 50, 170-173.
12.   Burley, S.K.; Bonanno, J.B. “Structural Genomics,” Methods Biochem. Anal., 2003, 44, 591-612.
13.   Pilloff, D.; Dabovic, K.; Romanowski, M.J.; Bonanno, J.B.; Doherty, M.; Burley, S.K.; Leyh, T.S. “The kinetic mechanism of phosphomevalonate kinase,” J. Biol. Chem., 2003, 278(7), 4510-4515.
14.   Burley, S.K.; Bonanno, J.B. “Structuring the Universe of Proteins,” Ann. Rev. Genomics and Hum. Gen., 2002, 3, 243-262.
15.   Ray, S.S.; Bonanno, J.B.; Rajashankar, K.R.; Pinho, M.G.; He, G.; De Lancastre, H.; Tomasz, A.; Burley, S.K. “Co-Crystal Structures of Diaminopimelate Decarboxylase: Mechanism, evolution, and inhibition of an antibiotic resistance factor,” Structure, 2002, 10, 1499-1508.
16.   Burley, S.K.; Bonanno, J.B. “Structural genomics of proteins contributing to conserved biochemical pathways and processes,” Curr. Opin. Struct. Biol., 2002, 12(3), 383-391.
17.   Deaconescu, A.M.; Roll-Mecak, A.; Bonanno, J.B.; Gerchman, S.E.; Kycia, H.; Studier, F.W.; Burley, S.K. “X-ray Structure of S. cerevisiae Homologous Miochondrial Matrix Factor 1 (Hmf1),” Proteins, 2002, 48(2), 431-436.
18.   Romanowski, M.J.; Bonanno, J.B.; Burley, S.K. “Crystal structure of the Streptococcus pneumoniae phosphomevalonate kinase, a member of the GHMP kinase superfamily,” Proteins, 2002, 47(4), 568-571.
19.   Romanowski, M.J.; Bonanno, J.B.; Burley, S.K. “Crystal structure of the Escherichia coli glucose-inhibited division protein B (GidB) reveals a methyltransferase fold,” Proteins, 2002, 47(4), 563-567. 
20.   Chance, M.R.; Bresnick, A.R.; Burley, S.K.; Jiang, J.S.; Lima, C.D.; Sali, A.; Almo, S.C.; Bonanno, J.B.; Buglino, J.A.; Boulton, S.; Chen, H.; Eswar, N.; He, G.; Huang, R.; Ilyin, V.; McMahan, L.; Pieper, U.; Ray, S.; Vidal, M.; Wang, L.K. “Structural genomics: a pipeline for providing structures for the biologist,” Protein Sci. 2002, Apr., 11(4), 723-738.
21.   Bonanno, J.B.; Edo, C.; Narayanan E.; Pieper, U.; Romanowski, M.J.; Ilyin, V.; Gerchman, S.E.; Kycia, H.; Studier, F.W.; Sali, A.; Burley, S.K. “Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis,” Proc. Nat. Acad. Sci. 2001, Nov. 6, 98(23), 12896-12901.
22.   Bonanno, J.B. “Quick Guide: Structural genomics,” Curr. Biol. 1999, Dec., 9(23), R871-R872.
23.   Burley, S.K.; Almo, S.C.; Bonanno, J.B.; Capel, M.; Chance, M.R.; Gaasterland, T.; Lin, D.; Sali, A.; Studier, F.W.; Swaminathan, S. “Structural genomics: beyond the human genome project,” Nat. Genet. 1999, Oct., 23(2), 151-157.
24.   Deo, R.C.; Bonanno, J.B.; Sonenberg, N.; Burley, S.K. “Recognition of polyadenylate RNA by the poly(A)-binding protein,” Cell 1999, Sep. 17; 98(6), 835-845.

Chemistry
25.   Lee, H.; Bonanno, J.B.; Bridgewater, B.M.; Churchill, D.G.; Parkin, G. “Ansa–Titanocene Pyrrolyl Complexes: The Synthesis and Structural Characterization of [Me2Si(C5Me4)2]Ti(NC4H4)X (X = H, Me, Cl and NC4H4) and [Me2Si(C5Me4)(C5Me3CH2)]Ti(NC4H4),” Polyhedron 2005, 24, 1356-1365.
26.   Bonanno, J.B.; Veige, A.S.; Wolczanski, P.T.; Lobkovski, E.B. “Amide derivatives of tantalum and a niobium-promoted ring opening of 3,5-lutidine,” Inorg. Chim. Acta 2003, 345, 173-184.
27.   Trnka, T.M.; Bonanno, J.B.; Bridgewater, B.M.; Parkin, G. “Bis(permethylindenyl) Complexes of Thorium: Synthesis, Structure, and Reactivity,” Organometallics 2001, 20(15), 3255-3264.
28.   Shin, J.H.; Savage, W.; Murphy, V.J.; Bonanno, J.B.; Churchill, D.G.; Parkin, G.  “The syntheses, structures and reactivity of bis(tert-butylcyclopentadienyl)molybdenum derivatives: nitrogen alkylation of an &#61544;-2-acetonitrile ligand and influence of the chalcogen on the barrier to inversion of chalcogenoether adducts,” J. Chem. Soc., Dalton Trans. 2001, 11, 1732-1753. 
29.   Kimblin, C.; Murphy, V.J.; Hascall, T.; Bridgewater, B.M.; Bonanno, J.B.; Parkin, G. “Structural Studies of the [Tris(imidazolyl)phosphine] Metal Nitrate Complexes {[PimPri,But]M(NO3)}+   (M = Co, Cu, Zn, Cd, Hg): Comparison of Nitrate-Binding Modes in Synthetic Analogues of Carbonic Anhydrase,” Inorg. Chem. 2000, 39(5), 967-974.
30.   Ghosh, P.; Wood, M.; Bonanno, J.B.; Hascall, T.; Parkin, G. “Bis(pyrazolylethyl)thioether ligation to zinc and cadmium: structural characterization of [S(CH2CH2pzMe2)2]ZnCl2, [S(CH2CH2pzMe2)2]CdI2 and [S((CH2CH2pzMe2)2]Cd(NO3)2,” Polyhedron 1999, 18(8,9), 1107-1113.
31.   Lee, H.; Bonanno, J.B.; Hascall, T.; Cordaro, J.; Hahn, J.M.; Parkin, G. “[Me2Si] Ansa bridged complexes of permethyltitanocene: synthesis and structural characterization of fulvene derivatives with trialkylidenemethane character,” Dalton Trans. 1999, 9; 1365-8.
32.   Ghosh, P.; Bonanno, J.B.; Parkin, G. “Synthesis and structure  of [BpBut,Pri]2Co: a bis(pyrazolyl)hydroborato cobalt(II) complex with trans [Co•••H-B] interactions,” Dalton Trans. 1998, 17, 2779-2782.
33.   Kuchta, M.C.; Bonanno, J.B.; Parkin, G. “Monovalent Gallium Complexes Supported by Tris(3,5-di-tert-butylpyrazolyl)hydroborato Ligation: The Syntheses and Structures of [TpBut2]Ga and Its GaI3 Adduct [Tp But2]Ga•GaI3,” J. Am. Chem. Soc. 1996,  118(44),  10914-10915.
34.   Bonanno, J.B.; Henry, T.P.; Neithamer, D.R.; Wolczanski, P.T.; Lobkovsky, E.B. “Aryl Amine C-N Bond Oxidative Addition to (silox)3Ta (silox = tBu3SiO),” J. Am. Chem. Soc. 1996, 118(21), 5132-5133.
35.   Bonanno, J.B.; Wolczanski, P.T.; Lobkovsky, E.B. “Arsinidine, Phosphinidine, and Imide Formation via 1,2-H2-Elimination from (silox)3HTaEHPh   (E = N, P, As): Structures of (silox)3Ta=EPh (E = P, As),” J. Am. Chem. Soc. 1994, 116(24), 11159-11160.
36.   Schaller, C.P.; Bonanno, J.B.; Wolczanski, P.T. “Does Methane Bind to d0 (tBu3SiNH)2Zr=NSitBu3 Prior to C-H Bond Activation?  An Inter vs. Intramolecular Isotope Effect Study,” J. Am. Chem. Soc. 1994, 116(9), 4133-4134.
37.   Sowa, J.R., Jr.; Bonanno, J.B.; Zanotti, V.; Angelici, R.J. “Calorimetric Studies of the Heats of Protonation of the Metal in cis-M(CO)2(bidentate phosphine)2 Complexes of Chromium, Molybdenum, and Tungsten,” Inorg. Chem. 1992, 31(8), 1370-1375.

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Revision 324 Mar 2006 - Main.JeffreyBonanno

 
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  • Country: USA
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  • Country: USA
  • Title: Director of Protein Production
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  • External Affiliation: Columbia University College of Medicine - Associate Research Scientist
  • Publications 
Molecular Biophysics
1.   Rao, K.N.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of glycerophosphodiester phosphodiesterase (GDPD) from Agrobacterium tumefaciens by SAD with a large asymmetric unit,” Proteins, 2006, in the press.
2.   Kumaran, D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of phosphatidylglycerophosphatase (PGPase), a putative membrane-bound lipid phosphatase, reveals a novel binuclear metal binding site and two 'proton wires',” Proteins, 2006, in the press.
3.   Eswarmoorthy, S; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Mechanism of action of a flavin-containing monooxygenase (FMO),” Proteins, 2006, in the press.
4.   Rao, K.N.; Kumaran, D.; Seetharaman, J.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal structure of trehalose-6-phosphate phosphatase related protein: biochemical and biological implications,” Proteins, 2006, in the press.
5.   Jayaraman, S; Kumaran, D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structure of a Putative HTH-Type Transcriptional Regulator yxaF from Bacillus subtilis,” Proteins, 2006, Epub ahead of print February 10.
6.   Jayaraman, S.; Rajashankar, K.R.; Solorzano, V.; Kniewel, R.; Lima, C.D.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Crystal Structures of two putative phosphoheptose isomerases,” Proteins, 2006, Epub ahead of print February 13.
7.   Agarwal, R.; Bonanno, J.B.; Burley, S.K.; and Swaminathan, S. “Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal” Acta Cryst., 2006, D62(4), 383-391.
8.   Bonanno, J.B.; Almo, S.C.; Bresnick, A.; Chance, M.R.; Fiser, A.; Swaminathan, S.; Jiang, J.; Studier, F. W.; Shapiro, L.; Lima, C.D.; Gaasterland, T.M.; Sali, A.; Bain, K.; Feil, I.; Gao, X.; Lorimer, D.; Ramos, A.; Sauder, J.M.; Wasserman, S.; Emtage, S.; D’Amico, K.; Burley, S.K. “A Large Scale Center for the NIH Protein Structure Initiative,” J. Struct. Funct. Genomics, 2005, 6(2-3), 225-232.
9.   Gao, X.; Bain, K.; Bonanno, J.B.; Buchanan, M.; Henderson, D.; Lorimer, D.; Marsh, C.; Reynes, J.A.; Sauder, J.M.; Schwinn, K.; Thai, C.; Burley, S.K. “High-Throughput Limited Proteolysis/Mass Spectrometry for Protein Domain Elucidation,” J. Struct. Funct. Genomics, 2005, 6(2-3), 129-134.
10.   Sickmier, E.A.; Brekasis, D.; Paranawithana, S.; Bonanno, J.B.; Paget, M.S.; Burley, S.K.; Kielkopf, C.L. “X-Ray Structure of a Rex-Family Repressor/NADH Complex Insights into the Mechanism of Redox Sensing,” Structure, 2005, 13(1), 43-54.
11.   Ray, S.S.; Bonanno, J.B.; Chen, H.; Wu, S.; Tomasz, A.; Burley, S.K. “X-ray Structure of a Methanococcus jannaschii DNA-Binding Protein: Implications for Antibiotic Resistance in Staphylococcus aureus,” Proteins, 2003, 50, 170-173.
12.   Burley, S.K.; Bonanno, J.B. “Structural Genomics,” Methods Biochem. Anal., 2003, 44, 591-612.
13.   Pilloff, D.; Dabovic, K.; Romanowski, M.J.; Bonanno, J.B.; Doherty, M.; Burley, S.K.; Leyh, T.S. “The kinetic mechanism of phosphomevalonate kinase,” J. Biol. Chem., 2003, 278(7), 4510-4515.
14.   Burley, S.K.; Bonanno, J.B. “Structuring the Universe of Proteins,” Ann. Rev. Genomics and Hum. Gen., 2002, 3, 243-262.
15.   Ray, S.S.; Bonanno, J.B.; Rajashankar, K.R.; Pinho, M.G.; He, G.; De Lancastre, H.; Tomasz, A.; Burley, S.K. “Co-Crystal Structures of Diaminopimelate Decarboxylase: Mechanism, evolution, and inhibition of an antibiotic resistance factor,” Structure, 2002, 10, 1499-1508.
16.   Burley, S.K.; Bonanno, J.B. “Structural genomics of proteins contributing to conserved biochemical pathways and processes,” Curr. Opin. Struct. Biol., 2002, 12(3), 383-391.
17.   Deaconescu, A.M.; Roll-Mecak, A.; Bonanno, J.B.; Gerchman, S.E.; Kycia, H.; Studier, F.W.; Burley, S.K. “X-ray Structure of S. cerevisiae Homologous Miochondrial Matrix Factor 1 (Hmf1),” Proteins, 2002, 48(2), 431-436.
18.   Romanowski, M.J.; Bonanno, J.B.; Burley, S.K. “Crystal structure of the Streptococcus pneumoniae phosphomevalonate kinase, a member of the GHMP kinase superfamily,” Proteins, 2002, 47(4), 568-571.
19.   Romanowski, M.J.; Bonanno, J.B.; Burley, S.K. “Crystal structure of the Escherichia coli glucose-inhibited division protein B (GidB) reveals a methyltransferase fold,” Proteins, 2002, 47(4), 563-567. 
20.   Chance, M.R.; Bresnick, A.R.; Burley, S.K.; Jiang, J.S.; Lima, C.D.; Sali, A.; Almo, S.C.; Bonanno, J.B.; Buglino, J.A.; Boulton, S.; Chen, H.; Eswar, N.; He, G.; Huang, R.; Ilyin, V.; McMahan, L.; Pieper, U.; Ray, S.; Vidal, M.; Wang, L.K. “Structural genomics: a pipeline for providing structures for the biologist,” Protein Sci. 2002, Apr., 11(4), 723-738.
21.   Bonanno, J.B.; Edo, C.; Narayanan E.; Pieper, U.; Romanowski, M.J.; Ilyin, V.; Gerchman, S.E.; Kycia, H.; Studier, F.W.; Sali, A.; Burley, S.K. “Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis,” Proc. Nat. Acad. Sci. 2001, Nov. 6, 98(23), 12896-12901.
22.   Bonanno, J.B. “Quick Guide: Structural genomics,” Curr. Biol. 1999, Dec., 9(23), R871-R872.
23.   Burley, S.K.; Almo, S.C.; Bonanno, J.B.; Capel, M.; Chance, M.R.; Gaasterland, T.; Lin, D.; Sali, A.; Studier, F.W.; Swaminathan, S. “Structural genomics: beyond the human genome project,” Nat. Genet. 1999, Oct., 23(2), 151-157.
24.   Deo, R.C.; Bonanno, J.B.; Sonenberg, N.; Burley, S.K. “Recognition of polyadenylate RNA by the poly(A)-binding protein,” Cell 1999, Sep. 17; 98(6), 835-845.

Chemistry
25.   Lee, H.; Bonanno, J.B.; Bridgewater, B.M.; Churchill, D.G.; Parkin, G. “Ansa–Titanocene Pyrrolyl Complexes: The Synthesis and Structural Characterization of [Me2Si(C5Me4)2]Ti(NC4H4)X (X = H, Me, Cl and NC4H4) and [Me2Si(C5Me4)(C5Me3CH2)]Ti(NC4H4),” Polyhedron 2005, 24, 1356-1365.
26.   Bonanno, J.B.; Veige, A.S.; Wolczanski, P.T.; Lobkovski, E.B. “Amide derivatives of tantalum and a niobium-promoted ring opening of 3,5-lutidine,” Inorg. Chim. Acta 2003, 345, 173-184.
27.   Trnka, T.M.; Bonanno, J.B.; Bridgewater, B.M.; Parkin, G. “Bis(permethylindenyl) Complexes of Thorium: Synthesis, Structure, and Reactivity,” Organometallics 2001, 20(15), 3255-3264.
28.   Shin, J.H.; Savage, W.; Murphy, V.J.; Bonanno, J.B.; Churchill, D.G.; Parkin, G.  “The syntheses, structures and reactivity of bis(tert-butylcyclopentadienyl)molybdenum derivatives: nitrogen alkylation of an &#61544;-2-acetonitrile ligand and influence of the chalcogen on the barrier to inversion of chalcogenoether adducts,” J. Chem. Soc., Dalton Trans. 2001, 11, 1732-1753. 
29.   Kimblin, C.; Murphy, V.J.; Hascall, T.; Bridgewater, B.M.; Bonanno, J.B.; Parkin, G. “Structural Studies of the [Tris(imidazolyl)phosphine] Metal Nitrate Complexes {[PimPri,But]M(NO3)}+   (M = Co, Cu, Zn, Cd, Hg): Comparison of Nitrate-Binding Modes in Synthetic Analogues of Carbonic Anhydrase,” Inorg. Chem. 2000, 39(5), 967-974.
30.   Ghosh, P.; Wood, M.; Bonanno, J.B.; Hascall, T.; Parkin, G. “Bis(pyrazolylethyl)thioether ligation to zinc and cadmium: structural characterization of [S(CH2CH2pzMe2)2]ZnCl2, [S(CH2CH2pzMe2)2]CdI2 and [S((CH2CH2pzMe2)2]Cd(NO3)2,” Polyhedron 1999, 18(8,9), 1107-1113.
31.   Lee, H.; Bonanno, J.B.; Hascall, T.; Cordaro, J.; Hahn, J.M.; Parkin, G. “[Me2Si] Ansa bridged complexes of permethyltitanocene: synthesis and structural characterization of fulvene derivatives with trialkylidenemethane character,” Dalton Trans. 1999, 9; 1365-8.
32.   Ghosh, P.; Bonanno, J.B.; Parkin, G. “Synthesis and structure  of [BpBut,Pri]2Co: a bis(pyrazolyl)hydroborato cobalt(II) complex with trans [Co•••H-B] interactions,” Dalton Trans. 1998, 17, 2779-2782.
33.   Kuchta, M.C.; Bonanno, J.B.; Parkin, G. “Monovalent Gallium Complexes Supported by Tris(3,5-di-tert-butylpyrazolyl)hydroborato Ligation: The Syntheses and Structures of [TpBut2]Ga and Its GaI3 Adduct [Tp But2]Ga•GaI3,” J. Am. Chem. Soc. 1996,  118(44),  10914-10915.
34.   Bonanno, J.B.; Henry, T.P.; Neithamer, D.R.; Wolczanski, P.T.; Lobkovsky, E.B. “Aryl Amine C-N Bond Oxidative Addition to (silox)3Ta (silox = tBu3SiO),” J. Am. Chem. Soc. 1996, 118(21), 5132-5133.
35.   Bonanno, J.B.; Wolczanski, P.T.; Lobkovsky, E.B. “Arsinidine, Phosphinidine, and Imide Formation via 1,2-H2-Elimination from (silox)3HTaEHPh   (E = N, P, As): Structures of (silox)3Ta=EPh (E = P, As),” J. Am. Chem. Soc. 1994, 116(24), 11159-11160.
36.   Schaller, C.P.; Bonanno, J.B.; Wolczanski, P.T. “Does Methane Bind to d0 (tBu3SiNH)2Zr=NSitBu3 Prior to C-H Bond Activation?  An Inter vs. Intramolecular Isotope Effect Study,” J. Am. Chem. Soc. 1994, 116(9), 4133-4134.
37.   Sowa, J.R., Jr.; Bonanno, J.B.; Zanotti, V.; Angelici, R.J. “Calorimetric Studies of the Heats of Protonation of the Metal in cis-M(CO)2(bidentate phosphine)2 Complexes of Chromium, Molybdenum, and Tungsten,” Inorg. Chem. 1992, 31(8), 1370-1375.
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