
| ||||||||
| Deleted: | ||||||||
| < < | 2008 Gupta YK, Nair DT, Wharton RP, Aggarwal AK. (2008) Structures of Human Pumilio with Noncognate RNAs Reveal Molecular Mechanisms for Binding Promiscuity. Structure, 16, 549-557. | |||||||
| 2007 Phan AT, Kuryavyi V, Luu KN, Patel DJ 'Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution.' Nucleic Acids Res 35:6517-25 Phan AT, Kuryavyi V, Burge S, Neidle S, Patel DJ 'Structure of an Unprecedented G-Quadruplex Scaffold in the Human c-kit Promoter.' J Am Chem Soc 129; 4386-4392 Rodríguez FA, Cai Y, Lin C, Tang Y, Kolbanovskiy A, Amin S, Patel DJ, Broyde S, Geacintov NE. 'Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context.' Nucleic Acids Res 35 1555–1568 a 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature 442, 31-2 Phan A.T., Luu K.N., Patel D.J. Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res., 34, 5715-5719. Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970. Teplova M., Yuan Y.R., Phan A.T., Malinina L., Ilin S., Teplov A., Patel D.J. Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13, 491 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. Zhang N., Phan A.T., Patel D.J. (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. . An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Deleted: | ||||||||
| < < | Zeng L, Zhang Q, Gerona-Navarro G, Moshkina N, Zhou MM. (2008) Structural Basis of Site-Specific Histone Recognition by the Bromodomains of Human Coactivators PCAF and CBP/p300. Structure, 16 , 643-52. | |||||||
| 2007 Phan AT, Kuryavyi V, Luu KN, Patel DJ 'Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution.' Nucleic Acids Res 35:6517-25 Phan AT, Kuryavyi V, Burge S, Neidle S, Patel DJ 'Structure of an Unprecedented G-Quadruplex Scaffold in the Human c-kit Promoter.' J Am Chem Soc 129; 4386-4392 Rodríguez FA, Cai Y, Lin C, Tang Y, Kolbanovskiy A, Amin S, Patel DJ, Broyde S, Geacintov NE. 'Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context.' Nucleic Acids Res 35 1555–1568 a 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature 442, 31-2 Phan A.T., Luu K.N., Patel D.J. Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res., 34, 5715-5719. Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970. Teplova M., Yuan Y.R., Phan A.T., Malinina L., Ilin S., Teplov A., Patel D.J. Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13, 491 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. Zhang N., Phan A.T., Patel D.J. (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. . An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
| ||||||||
| Added: | ||||||||
| > > | Zeng L, Zhang Q, Gerona-Navarro G, Moshkina N, Zhou MM. (2008) Structural Basis of Site-Specific Histone Recognition by the Bromodomains of Human Coactivators PCAF and CBP/p300. Structure, 16 , 643-52. | |||||||
| 2007 Phan AT, Kuryavyi V, Luu KN, Patel DJ 'Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution.' Nucleic Acids Res 35:6517-25 Phan AT, Kuryavyi V, Burge S, Neidle S, Patel DJ 'Structure of an Unprecedented G-Quadruplex Scaffold in the Human c-kit Promoter.' J Am Chem Soc 129; 4386-4392 Rodríguez FA, Cai Y, Lin C, Tang Y, Kolbanovskiy A, Amin S, Patel DJ, Broyde S, Geacintov NE. 'Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context.' Nucleic Acids Res 35 1555–1568 a 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature 442, 31-2 Phan A.T., Luu K.N., Patel D.J. Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res., 34, 5715-5719. Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970. Teplova M., Yuan Y.R., Phan A.T., Malinina L., Ilin S., Teplov A., Patel D.J. Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13, 491 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. Zhang N., Phan A.T., Patel D.J. (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. . An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Added: | ||||||||
| > > | 2008 Gupta YK, Nair DT, Wharton RP, Aggarwal AK. (2008) Structures of Human Pumilio with Noncognate RNAs Reveal Molecular Mechanisms for Binding Promiscuity. Structure, 16, 549-557. | |||||||
| 2007 Phan AT, Kuryavyi V, Luu KN, Patel DJ 'Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution.' Nucleic Acids Res 35:6517-25 Phan AT, Kuryavyi V, Burge S, Neidle S, Patel DJ 'Structure of an Unprecedented G-Quadruplex Scaffold in the Human c-kit Promoter.' J Am Chem Soc 129; 4386-4392 Rodríguez FA, Cai Y, Lin C, Tang Y, Kolbanovskiy A, Amin S, Patel DJ, Broyde S, Geacintov NE. 'Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context.' Nucleic Acids Res 35 1555–1568 a 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature 442, 31-2 Phan A.T., Luu K.N., Patel D.J. Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res., 34, 5715-5719. Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970. Teplova M., Yuan Y.R., Phan A.T., Malinina L., Ilin S., Teplov A., Patel D.J. Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13, 491 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. Zhang N., Phan A.T., Patel D.J. (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. . An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Changed: | ||||||||
| < < | 2007 Phan AT, Kuryavyi V, Burge S, Neidle S, Patel DJ 'Structure of an Unprecedented G-Quadruplex Scaffold in the Human c-kit Promoter.' J Am Chem Soc 129; 4386-4392 | |||||||
| > > | 2007 Phan AT, Kuryavyi V, Luu KN, Patel DJ 'Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution.' Nucleic Acids Res 35:6517-25 | |||||||
| Added: | ||||||||
| > > | Phan AT, Kuryavyi V, Burge S, Neidle S, Patel DJ 'Structure of an Unprecedented G-Quadruplex Scaffold in the Human c-kit Promoter.' J Am Chem Soc 129; 4386-4392 | |||||||
| Rodríguez FA, Cai Y, Lin C, Tang Y, Kolbanovskiy A, Amin S, Patel DJ, Broyde S, Geacintov NE. 'Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context.' Nucleic Acids Res 35 1555–1568 a 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature 442, 31-2 Phan A.T., Luu K.N., Patel D.J. Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res., 34, 5715-5719. Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970. Teplova M., Yuan Y.R., Phan A.T., Malinina L., Ilin S., Teplov A., Patel D.J. Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13, 491 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. Zhang N., Phan A.T., Patel D.J. (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. . An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Changed: | ||||||||
| < < | Rodriguez FA, Cai Y, Lin C, Tang Y, Kolbanovskiy A, Amin S, Patel DJ, Broyde S, ... 'Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context.' Nucleic Acids Res 35 1555–1568 a | |||||||
| > > | Rodríguez FA, Cai Y, Lin C, Tang Y, Kolbanovskiy A, Amin S, Patel DJ, Broyde S, Geacintov NE. 'Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context.' Nucleic Acids Res 35 1555–1568 a | |||||||
| 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature 442, 31-2 Phan A.T., Luu K.N., Patel D.J. Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res., 34, 5715-5719. Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970. Teplova M., Yuan Y.R., Phan A.T., Malinina L., Ilin S., Teplov A., Patel D.J. Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13, 491 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. Zhang N., Phan A.T., Patel D.J. (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. . An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Changed: | ||||||||
| < < | Rodriguez FA, Cai Y, Lin C, Tang Y, Kolbanovskiy A, Amin S, Patel DJ, Broyde S, ... 'Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context.' Nucleic Acids Res 2007 in press a | |||||||
| > > | Rodriguez FA, Cai Y, Lin C, Tang Y, Kolbanovskiy A, Amin S, Patel DJ, Broyde S, ... 'Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context.' Nucleic Acids Res 35 1555–1568 a | |||||||
| 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature 442, 31-2 Phan A.T., Luu K.N., Patel D.J. Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res., 34, 5715-5719. Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970. Teplova M., Yuan Y.R., Phan A.T., Malinina L., Ilin S., Teplov A., Patel D.J. Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13, 491 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. Zhang N., Phan A.T., Patel D.J. (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. . An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Changed: | ||||||||
| < < | 2007 Phan AT, Kuryavyi V, Burge S, Neidle S, Patel DJ 'Structure of an Unprecedented G-Quadruplex Scaffold in the Human c-kit Promoter.' _ Am Chem Soc_ 129; 4386-4392 | |||||||
| > > | 2007 Phan AT, Kuryavyi V, Burge S, Neidle S, Patel DJ 'Structure of an Unprecedented G-Quadruplex Scaffold in the Human c-kit Promoter.' J Am Chem Soc 129; 4386-4392 | |||||||
| Rodriguez FA, Cai Y, Lin C, Tang Y, Kolbanovskiy A, Amin S, Patel DJ, Broyde S, ... 'Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context.' Nucleic Acids Res 2007 in press a 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature 442, 31-2 Phan A.T., Luu K.N., Patel D.J. Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res., 34, 5715-5719. Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970. Teplova M., Yuan Y.R., Phan A.T., Malinina L., Ilin S., Teplov A., Patel D.J. Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13, 491 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. Zhang N., Phan A.T., Patel D.J. (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. . An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Changed: | ||||||||
| < < | 2007 Rodriguez FA, Cai Y, Lin C, Tang Y, Kolbanovskiy A, Amin S, Patel DJ, Broyde S, ... 'Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context.' Nucleic Acids Res 2007 in press a | |||||||
| > > | 2007 Phan AT, Kuryavyi V, Burge S, Neidle S, Patel DJ 'Structure of an Unprecedented G-Quadruplex Scaffold in the Human c-kit Promoter.' _ Am Chem Soc_ 129; 4386-4392 | |||||||
| Added: | ||||||||
| > > | Rodriguez FA, Cai Y, Lin C, Tang Y, Kolbanovskiy A, Amin S, Patel DJ, Broyde S, ... 'Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context.' Nucleic Acids Res 2007 in press a | |||||||
| 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature 442, 31-2 Phan A.T., Luu K.N., Patel D.J. Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res., 34, 5715-5719. Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970. Teplova M., Yuan Y.R., Phan A.T., Malinina L., Ilin S., Teplov A., Patel D.J. Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13, 491 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. Zhang N., Phan A.T., Patel D.J. (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. . An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Added: | ||||||||
| > > | Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13, 491 | |||||||
| 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. | ||||||||
| Deleted: | ||||||||
| < < | Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13, 491 | |||||||
| Zhang N., Phan A.T., Patel D.J. (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. . An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Changed: | ||||||||
| < < | 2007 Rodriguez FA, Cai Y, Lin C, Tang Y, Kolbanovskiy A, Amin S, Patel DJ, Broyde S, ... 'Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context.' Nucleic Acids Res 2007 in press | |||||||
| > > | 2007 Rodriguez FA, Cai Y, Lin C, Tang Y, Kolbanovskiy A, Amin S, Patel DJ, Broyde S, ... 'Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context.' Nucleic Acids Res 2007 in press a | |||||||
| 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature 442, 31-2 Phan A.T., Luu K.N., Patel D.J. Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res., 34, 5715-5719. Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970. Teplova M., Yuan Y.R., Phan A.T., Malinina L., Ilin S., Teplov A., Patel D.J. Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13, 491 Zhang N., Phan A.T., Patel D.J. (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. . An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
| ||||||||
| Added: | ||||||||
| > > | 2007 Rodriguez FA, Cai Y, Lin C, Tang Y, Kolbanovskiy A, Amin S, Patel DJ, Broyde S, ... 'Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context.' Nucleic Acids Res 2007 in press | |||||||
| 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature 442, 31-2 Phan A.T., Luu K.N., Patel D.J. Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res., 34, 5715-5719. Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970. Teplova M., Yuan Y.R., Phan A.T., Malinina L., Ilin S., Teplov A., Patel D.J. Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13, 491 Zhang N., Phan A.T., Patel D.J. (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. . An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Changed: | ||||||||
| < < | 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature 442(7098), 31-2 | |||||||
| > > | 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature 442, 31-2 | |||||||
| Changed: | ||||||||
| < < | Phan A.T., Luu K.N., Patel D.J. (2006). Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res., 34, 5715-5719. | |||||||
| > > | Phan A.T., Luu K.N., Patel D.J. Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res., 34, 5715-5719. | |||||||
| Changed: | ||||||||
| < < | Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. (2006). Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970. | |||||||
| > > | Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970. | |||||||
| Changed: | ||||||||
| < < | Teplova M., Yuan Y.R., Phan A.T., Malinina L., Ilin S., Teplov A., Patel D.J. (2006). Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. | |||||||
| > > | Teplova M., Yuan Y.R., Phan A.T., Malinina L., Ilin S., Teplov A., Patel D.J. Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. | |||||||
| Changed: | ||||||||
| < < | 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. | |||||||
| > > | 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. | |||||||
| Changed: | ||||||||
| < < | Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13(6), 491 | |||||||
| > > | Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13, 491 | |||||||
| Changed: | ||||||||
| < < | Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. | |||||||
| > > | Zhang N., Phan A.T., Patel D.J. (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. | |||||||
| Changed: | ||||||||
| < < | Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a | |||||||
| > > | Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a | |||||||
| Changed: | ||||||||
| < < | Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c | |||||||
| > > | Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. 24, 439-451. c | |||||||
| Changed: | ||||||||
| < < | Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. | |||||||
| > > | Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. . An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. | |||||||
| Changed: | ||||||||
| < < | Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c | |||||||
| > > | Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. 345, 141-151. c | |||||||
| 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 | ||||||||
| Changed: | ||||||||
| < < | Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. | |||||||
| > > | Phan A.T., Modi Y.S., Patel D.J. Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. | |||||||
| Changed: | ||||||||
| < < | Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. | |||||||
| > > | Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. | |||||||
| Changed: | ||||||||
| < < | Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) | |||||||
| > > | Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. | |||||||
| Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 | ||||||||
| Changed: | ||||||||
| < < | Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) | |||||||
| > > | Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. | |||||||
| Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 | ||||||||
| Changed: | ||||||||
| < < | Reverter, D., Lima, C. (2004) | |||||||
| > > | Reverter, D., Lima, C. | |||||||
| A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 | ||||||||
| Changed: | ||||||||
| < < | Ho, C., Wang, L., Lima, C., Shuman, S. (2004) | |||||||
| > > | Ho, C., Wang, L., Lima, C., Shuman, S. | |||||||
| Structure and Mechanism of RNA Ligase. Structure 12 327-339 | ||||||||
| Changed: | ||||||||
| < < | Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) | |||||||
| > > | Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. | |||||||
| Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
| ||||||||
| Changed: | ||||||||
| < < | Teplova M., Yuan Y.R., Phan A.T., Malinina L., Ilin S, Teplov A., Patel D.J. (2006). Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. | |||||||
| > > | Teplova M., Yuan Y.R., Phan A.T., Malinina L., Ilin S., Teplov A., Patel D.J. (2006). Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. | |||||||
| 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13(6), 491 Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
| ||||||||
| Changed: | ||||||||
| < < | Teplova M., Yuan Y.R., Phan A.T., Malinina L., Teplov A., Patel D.J. (2006). Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. | |||||||
| > > | Teplova M., Yuan Y.R., Phan A.T., Malinina L., Ilin S, Teplov A., Patel D.J. (2006). Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. | |||||||
| 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13(6), 491 Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 | ||||||||
| Changed: | ||||||||
| < < | Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. | |||||||
| > > | Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. | |||||||
| Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Changed: | ||||||||
| < < | Phan A.T., Luu K.N., Patel D.J. (2006). Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res., 34, 5715-5719 | |||||||
| > > | Phan A.T., Luu K.N., Patel D.J. (2006). Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res., 34, 5715-5719. | |||||||
| Changed: | ||||||||
| < < | Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. (2006). Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970 | |||||||
| > > | Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. (2006). Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970. | |||||||
| Changed: | ||||||||
| < < | Teplova M., Yuan Y.R., Phan A.T., Malinina L., Teplov A., Patel D.J. (2006). Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85 | |||||||
| > > | Teplova M., Yuan Y.R., Phan A.T., Malinina L., Teplov A., Patel D.J. (2006). Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85. | |||||||
| Changed: | ||||||||
| < < | 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nature Chemical Biology, 1, 167-173. | |||||||
| > > | 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nat. Chem. Biol., 1, 167-173. | |||||||
| Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13(6), 491 Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Added: | ||||||||
| > > | Phan A.T., Luu K.N., Patel D.J. (2006). Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution. Nucleic Acids Res., 34, 5715-5719 | |||||||
| Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. (2006). Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970 Teplova M., Yuan Y.R., Phan A.T., Malinina L., Teplov A., Patel D.J. (2006). Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nature Chemical Biology, 1, 167-173. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13(6), 491 Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Changed: | ||||||||
| < < | Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. (2006). Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970 | |||||||
| > > | Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. (2006). Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970 | |||||||
| Teplova M., Yuan Y.R., Phan A.T., Malinina L., Teplov A., Patel D.J. (2006). Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nature Chemical Biology, 1, 167-173. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13(6), 491 Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Changed: | ||||||||
| < < | Teplova M., Yuan Y.R., Phan A.T., Malinina L., Teplov A., Patel D.J. (2006). Structural Basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85 | |||||||
| > > | Teplova M., Yuan Y.R., Phan A.T., Malinina L., Teplov A., Patel D.J. (2006). Structural basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85 | |||||||
| 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nature Chemical Biology, 1, 167-173. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13(6), 491 Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Changed: | ||||||||
| < < | Teplova M, Yuan YR, Phan AT, Malinina L, Teplov A, Patel DJ 'Structural Basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen' Mol. Cell 21 75-85 | |||||||
| > > | Teplova M., Yuan Y.R., Phan A.T., Malinina L., Teplov A., Patel D.J. (2006). Structural Basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen. Mol. Cell, 21, 75-85 | |||||||
| 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nature Chemical Biology, 1, 167-173. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13(6), 491 Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Changed: | ||||||||
| < < | Luu KN, Phan AT, Kuryavyi V, Lacroix L, Patel DJ | |||||||
| > > | Luu K.N., Phan A.T., Kuryavyi V., Lacroix L., Patel D.J. (2006). Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970 | |||||||
| Deleted: | ||||||||
| < < | 'Structure of the human telomere in k(+) solution: an intramolecular (3 + 1) g-quadruplex scaffold.' J Am Chem Soc 2006 Aug 2;128(30):9963-70 | |||||||
| Teplova M, Yuan YR, Phan AT, Malinina L, Teplov A, Patel DJ 'Structural Basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen' Mol. Cell 21 75-85 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nature Chemical Biology, 1, 167-173. Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13(6), 491 Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. | ||||||||
| Deleted: | ||||||||
| < < | Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. | |||||||
| Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c | ||||||||
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| < < | Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. | |||||||
| 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 | ||||||||
| Added: | ||||||||
| > > | Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. | |||||||
| Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Changed: | ||||||||
| < < | Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 2006 May 28 | |||||||
| > > | Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 13(6), 491 | |||||||
| Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Changed: | ||||||||
| < < | 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature doi:10.1038/nature04802 a | |||||||
| > > | 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature 442(7098), 31-2 | |||||||
| Luu KN, Phan AT, Kuryavyi V, Lacroix L, Patel DJ
'Structure of the human telomere in k(+) solution: an intramolecular (3 +
1) g-quadruplex scaffold.'
J Am Chem Soc 2006 Aug 2;128(30):9963-70
Teplova M, Yuan YR, Phan AT, Malinina L, Teplov A, Patel DJ 'Structural Basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen' Mol. Cell 21 75-85
2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nature Chemical Biology, 1, 167-173.
Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 2006 May 28 Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
| ||||||||
| Added: | ||||||||
| > > | Luu KN, Phan AT, Kuryavyi V, Lacroix L, Patel DJ 'Structure of the human telomere in k(+) solution: an intramolecular (3 + 1) g-quadruplex scaffold.' J Am Chem Soc 2006 Aug 2;128(30):9963-70 | |||||||
| Teplova M, Yuan YR, Phan AT, Malinina L, Teplov A, Patel DJ 'Structural Basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen' Mol. Cell 21 75-85 | ||||||||
| Deleted: | ||||||||
| < < | ||||||||
| Deleted: | ||||||||
| < < | ||||||||
| 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nature Chemical Biology, 1, 167-173.
Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 2006 May 28 Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
| ||||||||
| Added: | ||||||||
| > > | ||||||||
| 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nature Chemical Biology, 1, 167-173.
Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 2006 May 28 Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
| ||||||||
| Changed: | ||||||||
| < < | 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature doi:10.1038/nature04802 | |||||||
| > > | 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature doi:10.1038/nature04802 a | |||||||
| Teplova M, Yuan YR, Phan AT, Malinina L, Teplov A, Patel DJ 'Structural Basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen' Mol. Cell 21 75-85 | ||||||||
| Changed: | ||||||||
| < < | ||||||||
| > > | 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nature Chemical Biology, 1, 167-173. | |||||||
| Deleted: | ||||||||
| < < | 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nature Chemical Biology, 1, 167-173. | |||||||
| Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 2006 May 28 Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
| ||||||||
| Changed: | ||||||||
| < < | 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nature Chemical Biology, 1, 167-173. | |||||||
| > > | 2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ 'Molecular basis for site-specific read-out of histon H3K4me3 by the BPTF PHD finger of NURF' Nature doi:10.1038/nature04802 | |||||||
| Added: | ||||||||
| > > | Teplova M, Yuan YR, Phan AT, Malinina L, Teplov A, Patel DJ 'Structural Basis for recognition and sequestration of UUU(OH) 3' termini of nascent RNA polymerase II transcripts by LA, a rheumatic diseaase autoanitgen' Mol. Cell 21 75-85 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nature Chemical Biology, 1, 167-173. | |||||||
| Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 2006 May 28 Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
| ||||||||
| Changed: | ||||||||
| < < | Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 2006 May 28 | |||||||
| > > | Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 2006 May 28 | |||||||
| Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Changed: | ||||||||
| < < | 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nature Chemical Biology, 1, 167-173. Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | |||||||
| > > | 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nature Chemical Biology, 1, 167-173.
Yunus AA, Lima CD 'Lysine activation and functional analysis of E2-mediated conjugation in the SUMO pathway.' Nat Struct Mol Biol 2006 May 28 Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | |||||||
| Deleted: | ||||||||
| < < | ||||||||
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| Changed: | ||||||||
| < < | Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. | |||||||
| > > | Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. | |||||||
| Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
| ||||||||
| Added: | ||||||||
| > > | Zhang N., Phan A.T., Patel D.J. (2005). (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex. J. Am. Chem. Soc., 127, 17277-17285. | |||||||
| Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
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| Changed: | ||||||||
| < < | 2005 Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a | |||||||
| > > | 2005 Phan A.T., Kuryavyi V., Gaw H.Y., Patel D.J. (2005). Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter. Nature Chemical Biology, 1, 167-173. | |||||||
| Added: | ||||||||
| > > | Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a | |||||||
| Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
| ||||||||
| Added: | ||||||||
| > > | 2005 Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965. a | |||||||
| Changed: | ||||||||
| < < | 2005 Zhang, N., Lin, C., Huang, X., Kolbanovskiy, A., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (2005). Methylation of Cytosine at C5 in a CpG Sequence Context Causes a Conformational Switch of a Benzo[a]pyrene diol epoxide-N(2)-guanine Adduct in DNA from a Minor Groove Alignment to Intercalation with Base Displacement. J Mol Biol 346, 951-965.(a) | |||||||
| > > | Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. c | |||||||
| Deleted: | ||||||||
| < < | Lois, L.M., and Lima, C.D. Structures of the Small Ubiquitin-like MOdifier E1 activating enzyme provide insights into SUMO activation and the mechanism for E2 recruitment to E1. EMBO J. (2005) 24, 439-451. (c) | |||||||
| Phan A.T., Kuryavyi V., Ma J.B., Faure A., Andréola M.L., Patel D.J. (2005). An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase. Proc. Natl. Acad. Sci. USA, 102, 634-639. Phan A.T., Modi Y.S., Patel D.J. (2004). Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc. , 126, 8710-8716. | ||||||||
| Changed: | ||||||||
| < < | Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. (c) | |||||||
| > > | Reverter, D., Wu, K., Erdene, T.G., Pan, Z.-Q., Wilkinson, K.D., and Lima, C.D. Structure of the complex between the Ulp/Senp protease family member Den1 and Nedd8. J. Mol. Biol. (2005) 345, 141-151. c | |||||||
| Added: | ||||||||
| > > | ||||||||
| Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., Patel D.J. (2004) Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. , 11, 1729-1741. 2004 Cheng, Y., Patel, D. (2004) Crystallographic Structure of the Nuclease Domain of 3'hExo, A DEDDh Family Member, Bound to rAMP. J. Mol. Biol. 343: 305-312 Gu, M., Fabrega, C., Liu, D., Liu, H., Kiledjian, M., Lima, C. (2004) Insights into the Structure , Mechanism and Regulation of Scavenger mRNA Decapping Activity. Mol. Cell 14 67-80 Fabrega, C., Hausmann, S., Shen, V., Shuman, S., Lima, C. (2004) Structure and Mechanism of the mRNA (guanine-N7) cap Methyltransferase. Mol. Cell 13 77-89 Reverter, D., Lima, C. (2004) A Basis for SUMO Protease Specificity Provided by Analysis of Human Senp2 and a Senp2-SUMO Complex. Structure 12 1519-1531 Ho, C., Wang, L., Lima, C., Shuman, S. (2004) Structure and Mechanism of RNA Ligase. Structure 12 327-339 Buglino, J., Onwueme, K., Ferreras, J., Quadri, L., Lima, C. (2004) Crystal Structure of PapA5 , a Phthiocerol Dimycocerosyl Transferase from Mycobacterium Tuberculosis. J. Biol. Chem. 279 30634-30642 | ||||||||
|