Difference: NmrDipep (1 vs. 2)
Revision 204 Mar 2010 - Main.DavidCowburn
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| function s2 = dipep(seq) % Sequence analysis for didpeptides in a specific sequence. % Used fields required % s.Sequence -- the sequence typically in a single letter form % optional % s.Start -- sequence number of first aa in s.Sequence % s.Good -- aa's to be favored in id'ing dipeptides % s.Bad -- aa's to be deprecated in id'ing dipeptides % % output % dipep is a text table in a 50 col setting with vertially arranged fields % -- % 1 n % 0 n % 2 n - number of residue % s a - amino acid single letter code % v b - subsequent aa % 1 f - numer of times ( <=9) that this dipeptide occurs % * * - starred if f == 1 and not bad (see later) % 1 s - score of 0 (blank) 1 or 2 for accpetable of good, - for any bad % e.g. % input structure = % % Sequence: 'lagvlgvacwym' % Good: 'lvw' % Bad: 'ac' % % % % 111 % 123456789012 % lagvlgvacwym % agvlgvacwym % 11211211111 % * * % --1211---1 | ||||||||
Revision 104 Mar 2010 - Main.DavidCowburn
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