Difference: NmrIT (21 vs. 22)

Revision 2205 Mar 2010 - Main.DavidCowburn

 
META TOPICPARENT name="NmrUserGroup"
Contents
Added:
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Internal features

Fitting a single Kd to multiple shift titration data - NmrTitration

  1. Demo script -- LIBRARY:matlab/lib1/titrationscript.html or NmrTitration
  2. Needed data - 1. protein concentration at start. 2. initial total volume, 3 concn of ligand in the added volumes , 4 incremental volume added , 5 number of increments (VS), 6 number of peaks logged (VN), 7 matrix of shifts (VS, VN)
  3. assumes multiple equal steps. Can be altered to use none equal volumes.
  4. Precision is limited by VS and VN and the relative Kd.

Predicting good dipeptide pairs for selective labeling - NmrDipep

  1. Demo script - LIBRARY:matlab/lib1/demo_dipep.html
  2. Needed data - sequence, 'good' residues, 'bad' residues lists. can also use library sequences as illustrated in demo
  3. Program - LIBRARY:matlab/lib1/dipep.m

 

Software external to NYSBC

NMR

Automated assignment and assignment checking

NEW NMRFAM PISTACHIO & PECAN

Format and interconversion issues

Academic development centers

Wuthrich Lab

  1. Documentation http://www.cara.nmr-software.org/downloads/
  2. local copy of Win 32 program -- see the attachement list below
  3. local copy of linux program -- see the attachment list below

Bax group

Structure Calculation

  • CyanA
  • See Amber this page

Commercial suppliers

Lists of lists

Molecular

Deleted:
<
<		 ---+Internal features

Fitting a single Kd to multiple shift titration data - NmrTitration

  1. Demo script -- LIBRARY:matlab/lib1/titrationscript.html or NmrTitration
  2. Needed data - 1. protein concentration at start. 2. initial total volume, 3 concn of ligand in the added volumes , 4 incremental volume added , 5 number of increments (VS), 6 number of peaks logged (VN), 7 matrix of shifts (VS, VN)
  3. assumes multiple equal steps. Can be altered to use none equal volumes.
  4. Precision is limited by VS and VN and the relative Kd.

Predicting good dipeptide pairs for selective labeling - NmrDipep

  1. Demo script -
  2. Needed data -
 

-- DavidCowburn - 07 Sep 2004

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META FILEATTACHMENT attr="" autoattached="1" comment="Cara 1.4.1 Win version " date="1144161309" name="cara_1.4.1_win32.zip" path="cara_1.4.1_win32.zip" size="2630945" user="DavidCowburn" version="1.1"
META TOPICMOVED by="DavidCowburn" date="1139633919" from="Main.ExternalSoftware" to="Main.NmrIT"
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