Difference: PdsData (1 vs. 2)

Revision 230 Oct 2007 - Main.KdDerr

 
META TOPICPARENT name="FilmScreeningAndScanning"
Contents

Densitometer data

Changed:
<
<		 Startx -- -depth 8 Cd /home/nsfhome/kderr/pds-…
>
>		 Startx -- -depth 8 Cd /home/nsfhome/kderr/pds-…
 
Changed:
<
<		 Change .HDR and .IMG files to lowercase Mv HDR filename.hdr
>
>		 Change .HDR and .IMG files to lowercase Mv HDR filename.hdr
 
Changed:
<
<		 Pds2mrc (for PDS) New title-title-set #-film#-mag-machine-um size-date-speed-initials
>
>		 Pds2mrc (for PDS) New title-title-set #-film#-mag-machine-um size-date-speed-initials
 
Changed:
<
<		 Or (for Zeiss) Open IMOD in another shell Cd /cryoem/IMOD/IMOD-linux.csh Tiff2mrc FILENAME.tif filename.mrc New title-title-set #-film#-mag-machine-um size-date-speed-initials
>
>		 Or (for Zeiss) Open IMOD in another shell Cd /cryoem/IMOD/IMOD-linux.csh Tiff2mrc FILENAME.tif filename.mrc New title-title-set #-film#-mag-machine-um size-date-speed-initials
 
Changed:
<
<		 Fftrans FILENAME.mrc filename.fft Mrcdisp filename.fft
>
>		 Fftrans FILENAME.mrc filename.fft Mrcdisp filename.fft
 
Changed:
<
<		 Sctravgft (scatter average ft) ALL defaults OK Enter file name [def.fft] filename Sector [def 5] Enter output name [def filename.ctf](ctf=contrast transfer function) Table size [def 1024] All sectors using defocus amount [def N]
>
>		 Sctravgft (scatter average ft) ALL defaults OK Enter file name [def.fft] filename Sector [def 5] Enter output name [def filename.ctf](ctf=contrast transfer function) Table size [def 1024] All sectors using defocus amount [def N]
 
Changed:
<
<		 Subctfbkg Remove parenthesis with dialog on third line Must rename file Control C to exit Use mv to move data back into original file
>
>		 Subctfbkg Remove parenthesis with dialog on third line Must rename file Control C to exit Use mv to move data back into original file
 
Changed:
<
<		 Gnuplot Plot “filename.ctf” Set xrange[0:512] Set yrange[0:250] Replot Set title “collection parameters, date, initials” Replot Set term postscript color Set output “filename.ctf.ps” Replot Set term x11 Quit
>
>		 Gnuplot Plot “filename.ctf” Set xrange[0:512] Set yrange[0:250] Replot Set title “collection parameters, date, initials” Replot Set term postscript color Set output “filename.ctf.ps” Replot Set term x11 Quit
 
Changed:
<
<		 Lpr filename (to print)
>
>		 Lpr filename (to print)
 
Changed:
<
<		 Subctfbkg Plot signal to noise ratio as .snr
>
>		 Subctfbkg Plot signal to noise ratio as .snr
 
  • Set ALLOWTOPICVIEW =

-- KdDerr - 30 Oct 2007

Revision 130 Oct 2007 - Main.KdDerr

 
META TOPICPARENT name="FilmScreeningAndScanning"
Contents

Densitometer data

Startx -- -depth 8 Cd /home/nsfhome/kderr/pds-…

Change .HDR and .IMG files to lowercase Mv HDR filename.hdr

Pds2mrc (for PDS) New title-title-set #-film#-mag-machine-um size-date-speed-initials

Or (for Zeiss) Open IMOD in another shell Cd /cryoem/IMOD/IMOD-linux.csh Tiff2mrc FILENAME.tif filename.mrc New title-title-set #-film#-mag-machine-um size-date-speed-initials

Fftrans FILENAME.mrc filename.fft Mrcdisp filename.fft

Sctravgft (scatter average ft) ALL defaults OK Enter file name [def.fft] filename Sector [def 5] Enter output name [def filename.ctf](ctf=contrast transfer function) Table size [def 1024] All sectors using defocus amount [def N]

Subctfbkg Remove parenthesis with dialog on third line Must rename file Control C to exit Use mv to move data back into original file

Gnuplot Plot “filename.ctf” Set xrange[0:512] Set yrange[0:250] Replot Set title “collection parameters, date, initials” Replot Set term postscript color Set output “filename.ctf.ps” Replot Set term x11 Quit

Lpr filename (to print)

Subctfbkg Plot signal to noise ratio as .snr

  • Set ALLOWTOPICVIEW =

-- KdDerr - 30 Oct 2007

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