Difference: SoftWare (1 vs. 6)

Revision 614 Jan 2010 - Main.BillRice

 
META TOPICPARENT name="CemIT"
Contents

List of Supported Software

EM Image Processing

Program Version Location Installed on cluster?
Spider 15.10, 17.12 /cryoem/spider/ yes
IMOD 3.13 /cryoem/ yes
Web 15.10,17.12 /cryoem/web/bin/web_linux yes
jweb 15.10,17.12 /cryoem/web/ yes
em2em 071217 /cryoem/em2em/em2em.e yes
image2000   /cryoem/image2000/ no
MRC/Nigel Unwin helical software /cryoem/helix   no
Situs 2.2 dl380/cryoem/Situs_2.2/ no
EMAN 1.9 /cryoem/EMAN yes
Added:
>
>
EMAN2 01-14-09 /cryoem/EMAN2/ no
 
Protomo 1.1.1 64-bit /dl380/cryoem/fsu/ yes
ctffind3 32 bit and 64 bit /cryoem/ctffind_amd64/, ctffind_intel32/ yes
frealign 8.08 /cryoem/frealign_v8.08/ yes

PDB Viewing/Manipulation/Rendering

Program Version Location Launch Command
Changed:
<
<
Deepview/Swiss PDBViewer 3.7sp5 /dl380/cryoem/SPDBV/ /dl380/cryoem/bin/spdbv
Pymol 0.98rc3 /dl380/cryoem/pymol/ /dl380/cryoem/bin/pymol.com
Chimera 1.2540 /dl380/cryoem/chimera /dl380/cryoem/bin/chimera
O 10.0.1 /dl380/cryoem/ono_10.0.1 /dl380/cryoem/bin/ono
Gerard Kleywegt Software Suite downloaded 1/19/06 /dl380/cryoem/bin/gerard/ various
Rasmol 2.7.2.1.1 /dl380/cryoem/bin/rasmol_bin/ /dl380/cryoem/bin/rasmol (32-bit version)
>
>
Deepview/Swiss PDBViewer 3.7sp5 /cryoem/SPDBV/ /dl380/cryoem/bin/spdbv
Pymol 0.98rc3 /dl380/cryoem/pymol/ /cryoem/bin/pymol.com
Chimera 1.2540 /dl380/cryoem/chimera /cryoem/bin/chimera
O 10.0.1 /dl380/cryoem/ono_10.0.1 /cryoem/bin/ono
Gerard Kleywegt Software Suite downloaded 1/19/06 /cryoem/bin/gerard/ various
Rasmol 2.7.2.1.1 /dl380/cryoem/bin/rasmol_bin/ /cryoem/bin/rasmol (32-bit version)
 

Segmentation

Added:
>
>
Program Version Location Installed on cluster?
 
Amira 3.1 /cryoem/Amira-3.1/ no
Amira 4.1 cem02 no
IMOD 3.13 /cryoem/ yes

  • Set ALLOWTOPICVIEW =

-- BillRice - 29 Mar 2006

Revision 514 Jan 2010 - Main.BillRice

 
META TOPICPARENT name="CemIT"
Contents

List of Supported Software

EM Image Processing

Program Version Location Installed on cluster?
Changed:
<
<
Spider 15.10 dl380/cryoem/spider/ yes
IMOD 3.13 dl380/cryoem/ no
Amira 3.1 dl380/cryoem/Amira-3.1/ no
Amira 4.1 some PC's no
Web 15.10 dl380/cryoem/web/bin/web_linux yes
em2em 071217 dl380/cryoem/em2em/em2em.e yes
image2000   dl380/cryoem/image2000/ no
>
>
Spider 15.10, 17.12 /cryoem/spider/ yes
IMOD 3.13 /cryoem/ yes
Web 15.10,17.12 /cryoem/web/bin/web_linux yes
jweb 15.10,17.12 /cryoem/web/ yes
em2em 071217 /cryoem/em2em/em2em.e yes
image2000   /cryoem/image2000/ no
MRC/Nigel Unwin helical software /cryoem/helix   no
Deleted:
<
<
MRC/Nigel Unwin helical software tbi   no
 
Situs 2.2 dl380/cryoem/Situs_2.2/ no
Changed:
<
<
EMAN 1.9 dl380/cryoem/EMAN yes
>
>
EMAN 1.9 /cryoem/EMAN yes
 
Protomo 1.1.1 64-bit /dl380/cryoem/fsu/ yes
ctffind3 32 bit and 64 bit /cryoem/ctffind_amd64/, ctffind_intel32/ yes
Added:
>
>
frealign 8.08 /cryoem/frealign_v8.08/ yes
 

PDB Viewing/Manipulation/Rendering

Program Version Location Launch Command
Deepview/Swiss PDBViewer 3.7sp5 /dl380/cryoem/SPDBV/ /dl380/cryoem/bin/spdbv
Pymol 0.98rc3 /dl380/cryoem/pymol/ /dl380/cryoem/bin/pymol.com
Chimera 1.2540 /dl380/cryoem/chimera /dl380/cryoem/bin/chimera
O 10.0.1 /dl380/cryoem/ono_10.0.1 /dl380/cryoem/bin/ono
Gerard Kleywegt Software Suite downloaded 1/19/06 /dl380/cryoem/bin/gerard/ various
Rasmol 2.7.2.1.1 /dl380/cryoem/bin/rasmol_bin/ /dl380/cryoem/bin/rasmol (32-bit version)
Added:
>
>

Segmentation

Amira 3.1 /cryoem/Amira-3.1/ no
Amira 4.1 cem02 no
IMOD 3.13 /cryoem/ yes
 
  • Set ALLOWTOPICVIEW =

-- BillRice - 29 Mar 2006

Revision 410 Aug 2009 - Main.BillRice

 
META TOPICPARENT name="CemIT"
Contents

List of Supported Software

EM Image Processing

Program Version Location Installed on cluster?
Spider 15.10 dl380/cryoem/spider/ yes
Changed:
<
<
IMOD 3.11 dl380/cryoem/ no
>
>
IMOD 3.13 dl380/cryoem/ no
 
Amira 3.1 dl380/cryoem/Amira-3.1/ no
Amira 4.1 some PC's no
Web 15.10 dl380/cryoem/web/bin/web_linux yes
em2em 071217 dl380/cryoem/em2em/em2em.e yes
image2000   dl380/cryoem/image2000/ no
MRC/Nigel Unwin helical software tbi   no
Situs 2.2 dl380/cryoem/Situs_2.2/ no
Changed:
<
<
EMAN 1.8 dl380/cryoem/EMAN yes
>
>
EMAN 1.9 dl380/cryoem/EMAN yes
 
Protomo 1.1.1 64-bit /dl380/cryoem/fsu/ yes
ctffind3 32 bit and 64 bit /cryoem/ctffind_amd64/, ctffind_intel32/ yes

PDB Viewing/Manipulation/Rendering

Program Version Location Launch Command
Deepview/Swiss PDBViewer 3.7sp5 /dl380/cryoem/SPDBV/ /dl380/cryoem/bin/spdbv
Pymol 0.98rc3 /dl380/cryoem/pymol/ /dl380/cryoem/bin/pymol.com
Chimera 1.2540 /dl380/cryoem/chimera /dl380/cryoem/bin/chimera
O 10.0.1 /dl380/cryoem/ono_10.0.1 /dl380/cryoem/bin/ono
Gerard Kleywegt Software Suite downloaded 1/19/06 /dl380/cryoem/bin/gerard/ various
Rasmol 2.7.2.1.1 /dl380/cryoem/bin/rasmol_bin/ /dl380/cryoem/bin/rasmol (32-bit version)

  • Set ALLOWTOPICVIEW =

-- BillRice - 29 Mar 2006

Revision 319 Aug 2008 - Main.BillRice

 
META TOPICPARENT name="CemIT"
Contents

List of Supported Software

EM Image Processing

Program Version Location Installed on cluster?
Spider 15.10 dl380/cryoem/spider/ yes
IMOD 3.11 dl380/cryoem/ no
Amira 3.1 dl380/cryoem/Amira-3.1/ no
Amira 4.1 some PC's no
Changed:
<
<
Web 15.10 dl380/cryoem/web/java/linux/ yes
>
>
Web 15.10 dl380/cryoem/web/bin/web_linux yes
 
em2em 071217 dl380/cryoem/em2em/em2em.e yes
image2000   dl380/cryoem/image2000/ no
MRC/Nigel Unwin helical software tbi   no
Situs 2.2 dl380/cryoem/Situs_2.2/ no
EMAN 1.8 dl380/cryoem/EMAN yes
Protomo 1.1.1 64-bit /dl380/cryoem/fsu/ yes
ctffind3 32 bit and 64 bit /cryoem/ctffind_amd64/, ctffind_intel32/ yes

PDB Viewing/Manipulation/Rendering

Program Version Location Launch Command
Deepview/Swiss PDBViewer 3.7sp5 /dl380/cryoem/SPDBV/ /dl380/cryoem/bin/spdbv
Pymol 0.98rc3 /dl380/cryoem/pymol/ /dl380/cryoem/bin/pymol.com
Chimera 1.2540 /dl380/cryoem/chimera /dl380/cryoem/bin/chimera
O 10.0.1 /dl380/cryoem/ono_10.0.1 /dl380/cryoem/bin/ono
Gerard Kleywegt Software Suite downloaded 1/19/06 /dl380/cryoem/bin/gerard/ various
Rasmol 2.7.2.1.1 /dl380/cryoem/bin/rasmol_bin/ /dl380/cryoem/bin/rasmol (32-bit version)

  • Set ALLOWTOPICVIEW =

-- BillRice - 29 Mar 2006

Revision 219 Aug 2008 - Main.BillRice

 
META TOPICPARENT name="CemIT"
Changed:
<
<		Contents

List of Supported Software

EM Image Processing

Program Version Location
Spider Oct 2005 dl380/cryoem/spider/
IMOD 3.38 dl380/cryoem/
Amira 3.0 dl380/cryoem/Amira-3.0/
Amira 3.1 dl380/cryoem/Amira-3.1/
Web   dl380/cryoem/web/java/linux/
em2em 040122 dl380/cryoem/em2em/em2em.e
image2000   dl380/cryoem/image2000/
MRC/Nigel Unwin helical software tbi  
Situs 2.2 dl380/cryoem/Situs_2.2/

PDB Viewing/Manipulation/Rendering

Program Version Location Launch Command
Deepview/Swiss PDBViewer 3.7sp5 /dl380/cryoem/SPDBV/ /dl380/cryoem/bin/spdbv
Pymol 0.98rc3 /dl380/cryoem/pymol/ /dl380/cryoem/bin/pymol.com
Chimera 1.2184 /dl380/cryoem/chimera /dl380/cryoem/bin/chimera
O 10.0.1 /dl380/cryoem/ono_10.0.1 /dl380/cryoem/bin/ono
Gerard Kleywegt Software Suite downloaded 1/19/06 /dl380/cryoem/bin/gerard/ various
Rasmol 2.7.2.1.1 /dl380/cryoem/bin/rasmol_bin/ /dl380/cryoem/bin/rasmol (32-bit version)

  • Set ALLOWTOPICVIEW =

-- BillRice - 29 Mar 2006

>
>		Contents

List of Supported Software

EM Image Processing

Program Version Location Installed on cluster?
Spider 15.10 dl380/cryoem/spider/ yes
IMOD 3.11 dl380/cryoem/ no
Amira 3.1 dl380/cryoem/Amira-3.1/ no
Amira 4.1 some PC's no
Web 15.10 dl380/cryoem/web/java/linux/ yes
em2em 071217 dl380/cryoem/em2em/em2em.e yes
image2000   dl380/cryoem/image2000/ no
MRC/Nigel Unwin helical software tbi   no
Situs 2.2 dl380/cryoem/Situs_2.2/ no
EMAN 1.8 dl380/cryoem/EMAN yes
Protomo 1.1.1 64-bit /dl380/cryoem/fsu/ yes
ctffind3 32 bit and 64 bit /cryoem/ctffind_amd64/, ctffind_intel32/ yes

PDB Viewing/Manipulation/Rendering

Program Version Location Launch Command
Deepview/Swiss PDBViewer 3.7sp5 /dl380/cryoem/SPDBV/ /dl380/cryoem/bin/spdbv
Pymol 0.98rc3 /dl380/cryoem/pymol/ /dl380/cryoem/bin/pymol.com
Chimera 1.2540 /dl380/cryoem/chimera /dl380/cryoem/bin/chimera
O 10.0.1 /dl380/cryoem/ono_10.0.1 /dl380/cryoem/bin/ono
Gerard Kleywegt Software Suite downloaded 1/19/06 /dl380/cryoem/bin/gerard/ various
Rasmol 2.7.2.1.1 /dl380/cryoem/bin/rasmol_bin/ /dl380/cryoem/bin/rasmol (32-bit version)
Added:
>
>
  • Set ALLOWTOPICVIEW =

-- BillRice - 29 Mar 2006

Revision 129 Mar 2006 - Main.BillRice

 
META TOPICPARENT name="CemIT"
Contents

List of Supported Software

EM Image Processing

Program Version Location
Spider Oct 2005 dl380/cryoem/spider/
IMOD 3.38 dl380/cryoem/
Amira 3.0 dl380/cryoem/Amira-3.0/
Amira 3.1 dl380/cryoem/Amira-3.1/
Web   dl380/cryoem/web/java/linux/
em2em 040122 dl380/cryoem/em2em/em2em.e
image2000   dl380/cryoem/image2000/
MRC/Nigel Unwin helical software tbi  
Situs 2.2 dl380/cryoem/Situs_2.2/

PDB Viewing/Manipulation/Rendering

Program Version Location Launch Command
Deepview/Swiss PDBViewer 3.7sp5 /dl380/cryoem/SPDBV/ /dl380/cryoem/bin/spdbv
Pymol 0.98rc3 /dl380/cryoem/pymol/ /dl380/cryoem/bin/pymol.com
Chimera 1.2184 /dl380/cryoem/chimera /dl380/cryoem/bin/chimera
O 10.0.1 /dl380/cryoem/ono_10.0.1 /dl380/cryoem/bin/ono
Gerard Kleywegt Software Suite downloaded 1/19/06 /dl380/cryoem/bin/gerard/ various
Rasmol 2.7.2.1.1 /dl380/cryoem/bin/rasmol_bin/ /dl380/cryoem/bin/rasmol (32-bit version)

  • Set ALLOWTOPICVIEW =

-- BillRice - 29 Mar 2006

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