Difference: SoftWare (3 vs. 4)

Revision 410 Aug 2009 - Main.BillRice

 
META TOPICPARENT name="CemIT"
Contents

List of Supported Software

EM Image Processing

Program Version Location Installed on cluster?
Spider 15.10 dl380/cryoem/spider/ yes
Changed:
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IMOD 3.11 dl380/cryoem/ no
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IMOD 3.13 dl380/cryoem/ no
 
Amira 3.1 dl380/cryoem/Amira-3.1/ no
Amira 4.1 some PC's no
Web 15.10 dl380/cryoem/web/bin/web_linux yes
em2em 071217 dl380/cryoem/em2em/em2em.e yes
image2000   dl380/cryoem/image2000/ no
MRC/Nigel Unwin helical software tbi   no
Situs 2.2 dl380/cryoem/Situs_2.2/ no
Changed:
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EMAN 1.8 dl380/cryoem/EMAN yes
>
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EMAN 1.9 dl380/cryoem/EMAN yes
 
Protomo 1.1.1 64-bit /dl380/cryoem/fsu/ yes
ctffind3 32 bit and 64 bit /cryoem/ctffind_amd64/, ctffind_intel32/ yes

PDB Viewing/Manipulation/Rendering

Program Version Location Launch Command
Deepview/Swiss PDBViewer 3.7sp5 /dl380/cryoem/SPDBV/ /dl380/cryoem/bin/spdbv
Pymol 0.98rc3 /dl380/cryoem/pymol/ /dl380/cryoem/bin/pymol.com
Chimera 1.2540 /dl380/cryoem/chimera /dl380/cryoem/bin/chimera
O 10.0.1 /dl380/cryoem/ono_10.0.1 /dl380/cryoem/bin/ono
Gerard Kleywegt Software Suite downloaded 1/19/06 /dl380/cryoem/bin/gerard/ various
Rasmol 2.7.2.1.1 /dl380/cryoem/bin/rasmol_bin/ /dl380/cryoem/bin/rasmol (32-bit version)

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-- BillRice - 29 Mar 2006

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