Difference: TargetTrack (1 vs. 9)

Revision 908 May 2012 - Main.RalphLasala

 
META TOPICPARENT name="TemimpsGroup"

TargetTrack

TargetTrack, a target registration database, provides information on the experimental progress and status of targets selected for structural determination by the Protein Structure Initiative and other worldwide high-throughput structural biology projects.

All groups who are interested in enabling biomedical research are encouraged to deposit their data to TargetTrack. Note that once a target is deposited to TargetTrack, it is considered public domain and cannot be removed from the database.

http://www.sbkb.org/tt/index.html

* TargetTrack is updated every Friday

Targets

Added:
>
>		86 selected 74 cloned 60 expressed 44 purified 18 screened/crystallized 5 EM images 2 in EMDB 1 in PDB
 
Protein ID Protein name Statusup
Changed:
<
<
APB presenilin homolog cloned, expressed, purified
AQP-1 plant aquaporin-2 cloned, expressed, purified, screened, crystallized
CamB presenilin homolog cloned, expressed, purified
CamP presenilin homolog cloned, expressed, purified
CNR2 cannabinoid receptor 2  
CysZ sulfate transporter cloned, expressed, purified, screened
>
>
AgrC histidine kinase selected, cloned, expressed, purified
APB presenilin homologue selected, cloned, expressed, purified
AQP-2 human aquaporin 2 selected
AQP-2 (S256A) human aquaporin 2 mutant selected, cloned, expressed, purified, crystallized, EM images
AQP-2 (S256D) human aquaporin 2 mutant selected, cloned, expressed, purified, crystallized, EM images
ArgF? presenilin homologue selected, cloned, expressed
Added:
>
>
ArgP? presenilin homologue selected, cloned, expressed
CACT carnitine/acylcarnitine translocase selected, cloned, expressed, purified
CamB presenilin homologue selected, cloned, expressed, purified
CamP presenilin homologue selected, cloned, expressed, purified
CNR2 cannabinoid receptor 2 selected
CysZ (I. loihiensis) sulfate transporter cloned, expressed, purified, screened
CysZ (P. fluorescens) sulfate transporter cloned, expressed, purified, screened
CysZ (S. enterica) sulfate transporter cloned, expressed, purified, screened
Dehly 1720 EmrE homologue selected, cloned, expressed, purified
 
EmrE-P1A12 Smr family mutidrug resistance protein cloned, expressed, purified
EmrE-P1B12 multidrug efflux system protein MdtI cloned, expressed, purified
EmrE-P1C5 SugE protein cloned, expressed, purified, screened
EmrE-P1D5 GroEL supressor protein SugE cloned, expressed, purified, screened
EmrE-P1G12 multidrug efflux system protein MdtI cloned, expressed, purified
Changed:
<
<
FLVCR1 heme transporter  
GIRK1 G-activated inward rectifier K channel  
HAM presenilin homolog cloned, expressed, purified
HFV presenilin homolog cloned, expressed, purified
HTR1F 5HT receptor (GPCR)  
KdpA K pump subunit cloned, expressed, purified
KdpB K pump subunit cloned, expressed, purified
KdpC K pump subunit cloned, expressed, purified
KdpF K pump subunit cloned, expressed, purified
>
>
FA presenilin homologe selected, cloned, expressed
FGP presenilin homologe selected, cloned, expressed, purified
FLVCR1 heme transporter selected cloned, expressed, purified, work stopped
GIRK1 G-activated inward rectifier K channel selected
HAM presenilin homologue selected, cloned, expressed
HFV presenilin homologue selected, cloned, expressed, purified
HGB presenilin homologue selected, cloned, expressed
HMM presenilin homologue selected, cloned, expressed
HRL presenilin homologue selected, cloned, expressed
Added:
>
>
HRU presenilin homologue selected, cloned, expressed
HTR1F 5HT receptor (GPCR) selected
HTT presenilin homologue selected, cloned, expressed
KdpA K pump subunit selected, cloned, expressed, purified
KdpB K pump subunit selected, cloned, expressed, purified
KdpC K pump subunit selected, cloned, expressed, purified
KdpD KdpD?/E two component system selected, cloned
KdpE KdpD?/E two component system selected, cloned, expressed, purified
KdpF K pump subunit selected, cloned, expressed
MCB presenilin homologue selected, cloned, expressed
MCLZ presenilin homologue selected, cloned, expressed, purified
MCMJR1 presenilin homologue selected, cloned, expressed, purified, screened
MCPS presenilin homologue selected, cloned
MCV preflagellin peptidase selected, cloned, expressed, purified, screened
Metev 1821 hypothetical protein Mev_1821 selected, cloned
METS presenilin homologue selected, cloned, expressed
MHJF1 presenilin homologue selected, cloned, expressed, purified, screened
MMS2 preflagellin peptidase selected, cloned, expressed, purified, screened
MSCA2A presenilin homologue selected, cloned, expressed
MSTPT presenilin homologue selected, cloned, expressed
NAM presenilin homologue selected, cloned, expressed
NblS? histidine kinase selected, cloned, expressed
Nicastrin subunit of y-secretase selected, cloned, expressed
NMP presenilin homologue selected, cloned, expressed
NrpR? nitrogen response regulator selected, cloned, expressed, purified, EM images, in EMDB, in PDB
PhoP two component response regulator selected, work stopped
PhoQ two component system histidine kinase selected, work stopped
PSN1 subunit of y-secretase selected, cloned, expressed
PT presenilin homolog selected, cloned, expressed, purified
RHBDL2 rhomboid protease homologue selected, cloned
Rho-1 rhomboid protease (native) selected, cloned
Rhomboid AarA intramembrane serine protease selected, cloned
RpaB? response regulator of NblS? selected, cloned, expressed, purified
SFV Semliki Forest Virus envelope protein selected, cloned, expressed, purified, screened, work stopped
SipA? auxiliary protein of NblS? selected, cloned, expressed, purified
SoPIP2?;1 plant aquaporin 2 selected, cloned, expressed, purified
SoPIP2?;1 plant aquaporin 2 selected, cloned, expressed, purified
TA presenilin homologue selected, cloned
TRPA1 transient receptor potential ankyrin 1 selected, cloned, expressed, purified, EM images, in EMDB
TRPV1 transient receptor potential channel V1 selected, cloned, expressed, purified
TRPV2 transient receptor potential channel V2 selected, cloned, expressed, purified, screened
TRPV3 transient receptor potential channel V3 selected, cloned, expressed, purified
TV presenilin homologue selected, cloned
UAGZ presenilin homologe selected, cloned, expressed, purified
UMA presenilin homologue selected, cloned, expressed, purified
YdjZ-P4C6 DedA family membrane protein selected, cloned
YdjZ-P4D5 DedA family membrane protein selected, cloned
YdjZ-P4E7 predicted inner membrane protein selected, cloned
YdjZ-P5B3 DedA family membrane protein selected, cloned
YiiP-A181 zinc transporter selected, cloned, expressed, purified, screened, crystallized, EM images
YkgB-11 hypothetical protein Z0378 selected, cloned
YkgB-5 conserved inner membrane protein selected, cloned
YkgB-6 hypothetical protein HP0565 selected, cloned
YkgB-9 hypothetical protein BT_1541 selected, cloned
 
KirBac1.1 inward rectifier K channel  
Changed:
<
<
MCMJR1 presenilin homolog cloned, expressed, purified, screened
>
>
KirBac3.1 inward rectifier K channel  
Deleted:
<
<
MCV preflagellin peptidase cloned, expressed, purified, screened
Metev 1821 hypothetical protein Mev_1821 cloned
MHJF1 presenilin homolog cloned, expressed, purified, screened
MMS2 preflagellin peptidase cloned, expressed, purified, screened
Nicastrin subunit of y-secretase cloned, expressed, purified
 
PEN1 subunit of y-secretase  
Changed:
<
<
PhoP two component response regulator  
>
>
Aph1 subunit of y-secretase  
Deleted:
<
<
PhoQ two component system histidine kinase  
PSN1 subunit of y-secretase cloned, expressed, purified
PT presenilin homolog cloned, expressed, purified
RHBDL2 rhomboid protease homolog cloned
Rho-1 rhomboid protease (native) cloned
Rhomboid AarA intramembrane serine protease cloned
TRPV2 transient receptor potential channel V2 cloned, expressed, purified, screened
UMA presenilin homolog cloned, expressed, purified
YdjZ-P4C6 DedA family membrane protein cloned
YdjZ-P4D5 DedA family membrane protein cloned
YdjZ-P4E7 predicted inner membrane protein cloned
YdjZ-P5B3 DedA family membrane protein cloned
YiiP-A181 zinc transporter cloned, expressed, purified, screened, crystallized
YkgB-11 hypothetical protein Z0378 cloned
YkgB-5 conserved inner membrane protein cloned
YkgB-6 hypothetical protein HP0565 cloned
YkgB-9 hypothetical protein BT_1541 cloned
 
Deleted:
<
<		d107 2
 

  • Set ALLOWTOPICVIEW =

-- RalphLasala - 01 May 2012

Deleted:
<
<		-- RalphLasala - 01 Jul 2011
  * temimps_targettrack_july2011: 1st submission to TargetTrack (July 2011)

* ralph_oct18.ppt: ralph_oct18.ppt

* temimps_target_track_oct2011: 2nd submission to TargetTrack (October 2011)

* temimps_pepcdb_oct2011: PepcDB? submission (October 2011)

* temimps_targetdb_oct2011: TargetDB? submission (October 2011)

* TEMIMPS_pepcdb_Nov2011: PepcDB? submission (November 2011)

* TEMIMPS_targettrack_Nov2011: TargetDB? submission (November 2011)

* TEMIMPS_TargetTrack_04-20-12: TargetTrack deposition (April 20, 2012)

Added:
>
>		 * temimps_targettrack_may042012: TargetTrack deposition (May 4, 2012)

* target_status_april2012_p1.pdf: targets (as of April 2012)

 
META FILEATTACHMENT attr="" autoattached="1" comment="TargetDB submission (October 2011)" date="1319723771" name="temimps_targetdb_oct2011" path="temimps_targetdb_oct2011" size="38338" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="PepcDB submission (October 2011)" date="1319571498" name="temimps_pepcdb_oct2011" path="temimps_pepcdb_oct2011" size="1321257" user="Main.RalphLasala" version="1"
Added:
>
>
META FILEATTACHMENT attr="" autoattached="1" comment="TargetTrack deposition (May 4, 2012)" date="1336507378" name="temimps_targettrack_may042012" path="temimps_targettrack_may042012" size="1291212" user="Main.RalphLasala" version="1"
 
META FILEATTACHMENT attr="" autoattached="1" comment="PepcDB submission (November 2011)" date="1322572445" name="TEMIMPS_pepcdb_Nov2011" path="TEMIMPS_pepcdb_Nov2011" size="890265" user="Main.RalphLasala" version="1"
Added:
>
>
META FILEATTACHMENT attr="" autoattached="1" comment="targets (as of April 2012)" date="1336507441" name="target_status_april2012_p1.pdf" path="target_status_april2012_p1.pdf" size="15168" user="Main.RalphLasala" version="1"
 
META FILEATTACHMENT attr="" autoattached="1" comment="2nd submission to TargetTrack (October 2011)" date="1319571466" name="temimps_target_track_oct2011" path="temimps_target_track_oct2011" size="1403115" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="TargetTrack deposition (April 20, 2012)" date="1335010228" name="TEMIMPS_TargetTrack_04-20-12" path="TEMIMPS_TargetTrack_04-20-12" size="1087551" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="TargetDB submission (November 2011)" date="1322572496" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="" date="1318895680" name="ralph_oct18.ppt" path="ralph_oct18.ppt" size="1473024" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="1st submission to TargetTrack (July 2011)" date="1318602779" name="temimps_targettrack_july2011" path="temimps_targettrack_july2011" size="274467" user="Main.RalphLasala" version="1"

Revision 821 Apr 2012 - Main.RalphLasala

 
META TOPICPARENT name="TemimpsGroup"

TargetTrack

TargetTrack, a target registration database, provides information on the experimental progress and status of targets selected for structural determination by the Protein Structure Initiative and other worldwide high-throughput structural biology projects.

Changed:
<
<		http://beta.sbkb.org/tt/
>
>		All groups who are interested in enabling biomedical research are encouraged to deposit their data to TargetTrack. Note that once a target is deposited to TargetTrack, it is considered public domain and cannot be removed from the database.
 
Changed:
<
<		It is a merger of TargetDB? and PepcDB?.
>
>		http://www.sbkb.org/tt/index.html
 
Deleted:
<
<		New features in TargetTrack include:

* Ability to define complex targets, including targets made up of multiple protein and/or nucleic acid sequences, or targets comprised of references to existing single-sequence targets * Ability to define one or more ligands bound to the target, either at time of selection or during structural studies * New data items to capture biological information about the target, such as "target rationale", "target annotation", and "target protein type" * New data item "target partnership" to capture PSI:Biology collaboration information * Expanded controlled vocabulary for "status", "target category", "protocol type", "sequence type", and other enumeration data items

The current schemas for TargetDB? and PepcDB? will continue to be supported for select activities (such as PSI-2 and non-PSI projects); and TargetTrack will be backwards compatible for these files.

TargetDB?/PepcDB and TargetTrack will operate in parallel until the end of 2011. TargetDB?/PepcDB updates are still being accepted for the duration of this transition period.

Current database update schedule:

* PepcDB? is updated every Wednesday

* TargetDB? is updated every Thursday d82 2

  * TargetTrack is updated every Friday

Targets

Protein ID Protein name Status
APB presenilin homolog cloned, expressed, purified
AQP-1 plant aquaporin-2 cloned, expressed, purified, screened, crystallized
CamB presenilin homolog cloned, expressed, purified
CamP presenilin homolog cloned, expressed, purified
CNR2 cannabinoid receptor 2  
CysZ sulfate transporter cloned, expressed, purified, screened
EmrE-P1A12 Smr family mutidrug resistance protein cloned, expressed, purified
EmrE-P1B12 multidrug efflux system protein MdtI cloned, expressed, purified
EmrE-P1C5 SugE protein cloned, expressed, purified, screened
EmrE-P1D5 GroEL supressor protein SugE cloned, expressed, purified, screened
EmrE-P1G12 multidrug efflux system protein MdtI cloned, expressed, purified
FLVCR1 heme transporter  
GIRK1 G-activated inward rectifier K channel  
HAM presenilin homolog cloned, expressed, purified
HFV presenilin homolog cloned, expressed, purified
HTR1F 5HT receptor (GPCR)  
KdpA K pump subunit cloned, expressed, purified
KdpB K pump subunit cloned, expressed, purified
KdpC K pump subunit cloned, expressed, purified
KdpF K pump subunit cloned, expressed, purified
KirBac1.1 inward rectifier K channel  
MCMJR1 presenilin homolog cloned, expressed, purified, screened
MCV preflagellin peptidase cloned, expressed, purified, screened
Metev 1821 hypothetical protein Mev_1821 cloned
MHJF1 presenilin homolog cloned, expressed, purified, screened
MMS2 preflagellin peptidase cloned, expressed, purified, screened
Nicastrin subunit of y-secretase cloned, expressed, purified
PEN1 subunit of y-secretase  
PhoP two component response regulator  
PhoQ two component system histidine kinase  
PSN1 subunit of y-secretase cloned, expressed, purified
PT presenilin homolog cloned, expressed, purified
RHBDL2 rhomboid protease homolog cloned
Rho-1 rhomboid protease (native) cloned
Rhomboid AarA intramembrane serine protease cloned
TRPV2 transient receptor potential channel V2 cloned, expressed, purified, screened
UMA presenilin homolog cloned, expressed, purified
YdjZ-P4C6 DedA family membrane protein cloned
YdjZ-P4D5 DedA family membrane protein cloned
YdjZ-P4E7 predicted inner membrane protein cloned
YdjZ-P5B3 DedA family membrane protein cloned
YiiP-A181 zinc transporter cloned, expressed, purified, screened, crystallized
YkgB-11 hypothetical protein Z0378 cloned
YkgB-5 conserved inner membrane protein cloned
YkgB-6 hypothetical protein HP0565 cloned
YkgB-9 hypothetical protein BT_1541 cloned

d107 2

  • Set ALLOWTOPICVIEW =

-- RalphLasala - 01 May 2012

-- RalphLasala - 01 Jul 2011 * temimps_targettrack_july2011: 1st submission to TargetTrack (July 2011)

* ralph_oct18.ppt: ralph_oct18.ppt

* temimps_target_track_oct2011: 2nd submission to TargetTrack (October 2011)

* temimps_pepcdb_oct2011: PepcDB? submission (October 2011)

* temimps_targetdb_oct2011: TargetDB? submission (October 2011)

* TEMIMPS_pepcdb_Nov2011: PepcDB? submission (November 2011)

* TEMIMPS_targettrack_Nov2011: TargetDB? submission (November 2011)

* TEMIMPS_TargetTrack_04-20-12: TargetTrack deposition (April 20, 2012)

META FILEATTACHMENT attr="" autoattached="1" comment="TargetDB submission (October 2011)" date="1319723771" name="temimps_targetdb_oct2011" path="temimps_targetdb_oct2011" size="38338" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="PepcDB submission (October 2011)" date="1319571498" name="temimps_pepcdb_oct2011" path="temimps_pepcdb_oct2011" size="1321257" user="Main.RalphLasala" version="1"
Added:
>
>
META FILEATTACHMENT attr="" autoattached="1" comment="PepcDB submission (November 2011)" date="1322572445" name="TEMIMPS_pepcdb_Nov2011" path="TEMIMPS_pepcdb_Nov2011" size="890265" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="2nd submission to TargetTrack (October 2011)" date="1319571466" name="temimps_target_track_oct2011" path="temimps_target_track_oct2011" size="1403115" user="Main.RalphLasala" version="1"
 
META FILEATTACHMENT attr="" autoattached="1" comment="TargetTrack deposition (April 20, 2012)" date="1335010228" name="TEMIMPS_TargetTrack_04-20-12" path="TEMIMPS_TargetTrack_04-20-12" size="1087551" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="TargetDB submission (November 2011)" date="1322572496" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" user="Main.RalphLasala" version="1"
Deleted:
<
<
META FILEATTACHMENT attachment="TEMIMPS_targettrack_Nov2011" attr="" comment="TargetDB submission (November 2011)" date="1322572495" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" stream="TEMIMPS_targettrack_Nov2011" user="Main.RalphLasala" version="1"
 
META FILEATTACHMENT attr="" autoattached="1" comment="" date="1318895680" name="ralph_oct18.ppt" path="ralph_oct18.ppt" size="1473024" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="1st submission to TargetTrack (July 2011)" date="1318602779" name="temimps_targettrack_july2011" path="temimps_targettrack_july2011" size="274467" user="Main.RalphLasala" version="1"

Revision 729 Nov 2011 - Main.RalphLasala

 
META TOPICPARENT name="TemimpsGroup"

TargetTrack

TargetTrack, a target registration database, provides information on the experimental progress and status of targets selected for structural determination by the Protein Structure Initiative and other worldwide high-throughput structural biology projects.

http://beta.sbkb.org/tt/

It is a merger of TargetDB? and PepcDB?.

New features in TargetTrack include:

* Ability to define complex targets, including targets made up of multiple protein and/or nucleic acid sequences, or targets comprised of references to existing single-sequence targets * Ability to define one or more ligands bound to the target, either at time of selection or during structural studies * New data items to capture biological information about the target, such as "target rationale", "target annotation", and "target protein type" * New data item "target partnership" to capture PSI:Biology collaboration information * Expanded controlled vocabulary for "status", "target category", "protocol type", "sequence type", and other enumeration data items

The current schemas for TargetDB? and PepcDB? will continue to be supported for select activities (such as PSI-2 and non-PSI projects); and TargetTrack will be backwards compatible for these files.

TargetDB?/PepcDB and TargetTrack will operate in parallel until the end of 2011. TargetDB?/PepcDB updates are still being accepted for the duration of this transition period.

Current database update schedule:

* PepcDB? is updated every Wednesday

* TargetDB? is updated every Thursday d82 2 * TargetTrack is updated every Friday

Targets

Protein ID Protein name Status
APB presenilin homolog cloned, expressed, purified
AQP-1 plant aquaporin-2 cloned, expressed, purified, screened, crystallized
CamB presenilin homolog cloned, expressed, purified
CamP presenilin homolog cloned, expressed, purified
CNR2 cannabinoid receptor 2  
CysZ sulfate transporter cloned, expressed, purified, screened
EmrE-P1A12 Smr family mutidrug resistance protein cloned, expressed, purified
EmrE-P1B12 multidrug efflux system protein MdtI cloned, expressed, purified
EmrE-P1C5 SugE protein cloned, expressed, purified, screened
EmrE-P1D5 GroEL supressor protein SugE cloned, expressed, purified, screened
EmrE-P1G12 multidrug efflux system protein MdtI cloned, expressed, purified
FLVCR1 heme transporter  
GIRK1 G-activated inward rectifier K channel  
HAM presenilin homolog cloned, expressed, purified
HFV presenilin homolog cloned, expressed, purified
HTR1F 5HT receptor (GPCR)  
KdpA K pump subunit cloned, expressed, purified
KdpB K pump subunit cloned, expressed, purified
KdpC K pump subunit cloned, expressed, purified
KdpF K pump subunit cloned, expressed, purified
KirBac1.1 inward rectifier K channel  
MCMJR1 presenilin homolog cloned, expressed, purified, screened
MCV preflagellin peptidase cloned, expressed, purified, screened
Metev 1821 hypothetical protein Mev_1821 cloned
MHJF1 presenilin homolog cloned, expressed, purified, screened
MMS2 preflagellin peptidase cloned, expressed, purified, screened
Nicastrin subunit of y-secretase cloned, expressed, purified
PEN1 subunit of y-secretase  
PhoP two component response regulator  
PhoQ two component system histidine kinase  
PSN1 subunit of y-secretase cloned, expressed, purified
PT presenilin homolog cloned, expressed, purified
RHBDL2 rhomboid protease homolog cloned
Rho-1 rhomboid protease (native) cloned
Rhomboid AarA intramembrane serine protease cloned
TRPV2 transient receptor potential channel V2 cloned, expressed, purified, screened
UMA presenilin homolog cloned, expressed, purified
YdjZ-P4C6 DedA family membrane protein cloned
YdjZ-P4D5 DedA family membrane protein cloned
YdjZ-P4E7 predicted inner membrane protein cloned
YdjZ-P5B3 DedA family membrane protein cloned
YiiP-A181 zinc transporter cloned, expressed, purified, screened, crystallized
YkgB-11 hypothetical protein Z0378 cloned
YkgB-5 conserved inner membrane protein cloned
YkgB-6 hypothetical protein HP0565 cloned
YkgB-9 hypothetical protein BT_1541 cloned

d107 2

  • Set ALLOWTOPICVIEW =

-- RalphLasala - 01 May 2012

-- RalphLasala - 01 Jul 2011 * temimps_targettrack_july2011: 1st submission to TargetTrack (July 2011)

* ralph_oct18.ppt: ralph_oct18.ppt

* temimps_target_track_oct2011: 2nd submission to TargetTrack (October 2011)

* temimps_pepcdb_oct2011: PepcDB? submission (October 2011)

Added:
>
>		 * temimps_targetdb_oct2011: TargetDB? submission (October 2011)

* TEMIMPS_pepcdb_Nov2011: PepcDB? submission (November 2011)

  * TEMIMPS_targettrack_Nov2011: TargetDB? submission (November 2011)
Added:
>
>		 * TEMIMPS_TargetTrack_04-20-12: TargetTrack deposition (April 20, 2012)
 
META FILEATTACHMENT attr="" autoattached="1" comment="TargetDB submission (October 2011)" date="1319723771" name="temimps_targetdb_oct2011" path="temimps_targetdb_oct2011" size="38338" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="PepcDB submission (October 2011)" date="1319571498" name="temimps_pepcdb_oct2011" path="temimps_pepcdb_oct2011" size="1321257" user="Main.RalphLasala" version="1"
Added:
>
>
META FILEATTACHMENT attr="" autoattached="1" comment="TargetTrack deposition (April 20, 2012)" date="1335010228" name="TEMIMPS_TargetTrack_04-20-12" path="TEMIMPS_TargetTrack_04-20-12" size="1087551" user="Main.RalphLasala" version="1"
 
META FILEATTACHMENT attr="" autoattached="1" comment="TargetDB submission (November 2011)" date="1322572496" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attachment="TEMIMPS_targettrack_Nov2011" attr="" comment="TargetDB submission (November 2011)" date="1322572495" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" stream="TEMIMPS_targettrack_Nov2011" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="" date="1318895680" name="ralph_oct18.ppt" path="ralph_oct18.ppt" size="1473024" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="1st submission to TargetTrack (July 2011)" date="1318602779" name="temimps_targettrack_july2011" path="temimps_targettrack_july2011" size="274467" user="Main.RalphLasala" version="1"

Revision 627 Oct 2011 - Main.RalphLasala

 
META TOPICPARENT name="TemimpsGroup"

TargetTrack

TargetTrack, a target registration database, provides information on the experimental progress and status of targets selected for structural determination by the Protein Structure Initiative and other worldwide high-throughput structural biology projects.

http://beta.sbkb.org/tt/

It is a merger of TargetDB? and PepcDB?.

New features in TargetTrack include:

* Ability to define complex targets, including targets made up of multiple protein and/or nucleic acid sequences, or targets comprised of references to existing single-sequence targets * Ability to define one or more ligands bound to the target, either at time of selection or during structural studies * New data items to capture biological information about the target, such as "target rationale", "target annotation", and "target protein type" * New data item "target partnership" to capture PSI:Biology collaboration information * Expanded controlled vocabulary for "status", "target category", "protocol type", "sequence type", and other enumeration data items

The current schemas for TargetDB? and PepcDB? will continue to be supported for select activities (such as PSI-2 and non-PSI projects); and TargetTrack will be backwards compatible for these files.

TargetDB?/PepcDB and TargetTrack will operate in parallel until the end of 2011. TargetDB?/PepcDB updates are still being accepted for the duration of this transition period.

Current database update schedule:

* PepcDB? is updated every Wednesday

* TargetDB? is updated every Thursday d82 2 * TargetTrack is updated every Friday

Changed:
<
<

Our Targets

>
>

Targets

 
Protein ID Protein name Status
APB presenilin homolog cloned, expressed, purified
AQP-1 plant aquaporin-2 cloned, expressed, purified, screened, crystallized
CamB presenilin homolog cloned, expressed, purified
CamP presenilin homolog cloned, expressed, purified
CNR2 cannabinoid receptor 2  
CysZ sulfate transporter cloned, expressed, purified, screened
EmrE-P1A12 Smr family mutidrug resistance protein cloned, expressed, purified
EmrE-P1B12 multidrug efflux system protein MdtI cloned, expressed, purified
EmrE-P1C5 SugE protein cloned, expressed, purified, screened
EmrE-P1D5 GroEL supressor protein SugE cloned, expressed, purified, screened
Changed:
<
<
EmrE-P1G12 multidrug efflux system protein MdtI cloned
>
>
EmrE-P1G12 multidrug efflux system protein MdtI cloned, expressed, purified
 
FLVCR1 heme transporter  
GIRK1 G-activated inward rectifier K channel  
HAM presenilin homolog cloned, expressed, purified
HFV presenilin homolog cloned, expressed, purified
HTR1F 5HT receptor (GPCR)  
Changed:
<
<
KdpA K pump subunit  
KdpB K pump subunit  
KdpC K pump subunit  
KdpF K pump subunit  
>
>
KdpA K pump subunit cloned, expressed, purified
KdpB K pump subunit cloned, expressed, purified
KdpC K pump subunit cloned, expressed, purified
KdpF K pump subunit cloned, expressed, purified
 
KirBac1.1 inward rectifier K channel  
MCMJR1 presenilin homolog cloned, expressed, purified, screened
MCV preflagellin peptidase cloned, expressed, purified, screened
Metev 1821 hypothetical protein Mev_1821 cloned
MHJF1 presenilin homolog cloned, expressed, purified, screened
MMS2 preflagellin peptidase cloned, expressed, purified, screened
Nicastrin subunit of y-secretase cloned, expressed, purified
PEN1 subunit of y-secretase  
PhoP two component response regulator  
PhoQ two component system histidine kinase  
PSN1 subunit of y-secretase cloned, expressed, purified
PT presenilin homolog cloned, expressed, purified
RHBDL2 rhomboid protease homolog cloned
Rho-1 rhomboid protease (native) cloned
Rhomboid AarA intramembrane serine protease cloned
TRPV2 transient receptor potential channel V2 cloned, expressed, purified, screened
UMA presenilin homolog cloned, expressed, purified
YdjZ-P4C6 DedA family membrane protein cloned
YdjZ-P4D5 DedA family membrane protein cloned
YdjZ-P4E7 predicted inner membrane protein cloned
YdjZ-P5B3 DedA family membrane protein cloned
YiiP-A181 zinc transporter cloned, expressed, purified, screened, crystallized
YkgB-11 hypothetical protein Z0378 cloned
YkgB-5 conserved inner membrane protein cloned
YkgB-6 hypothetical protein HP0565 cloned
YkgB-9 hypothetical protein BT_1541 cloned

d107 2

  • Set ALLOWTOPICVIEW =

-- RalphLasala - 01 May 2012

-- RalphLasala - 01 Jul 2011 * temimps_targettrack_july2011: 1st submission to TargetTrack (July 2011)

* ralph_oct18.ppt: ralph_oct18.ppt

* temimps_target_track_oct2011: 2nd submission to TargetTrack (October 2011)

Added:
>
>		 * temimps_pepcdb_oct2011: PepcDB? submission (October 2011)

* TEMIMPS_targettrack_Nov2011: TargetDB? submission (November 2011)

 

META FILEATTACHMENT attr="" autoattached="1" comment="TargetDB submission (October 2011)" date="1319723771" name="temimps_targetdb_oct2011" path="temimps_targetdb_oct2011" size="38338" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="PepcDB submission (October 2011)" date="1319571498" name="temimps_pepcdb_oct2011" path="temimps_pepcdb_oct2011" size="1321257" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="TargetDB submission (November 2011)" date="1322572496" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attachment="TEMIMPS_targettrack_Nov2011" attr="" comment="TargetDB submission (November 2011)" date="1322572495" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" stream="TEMIMPS_targettrack_Nov2011" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="" date="1318895680" name="ralph_oct18.ppt" path="ralph_oct18.ppt" size="1473024" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="1st submission to TargetTrack (July 2011)" date="1318602779" name="temimps_targettrack_july2011" path="temimps_targettrack_july2011" size="274467" user="Main.RalphLasala" version="1"

Revision 525 Oct 2011 - Main.RalphLasala

 
META TOPICPARENT name="TemimpsGroup"

TargetTrack

TargetTrack, a target registration database, provides information on the experimental progress and status of targets selected for structural determination by the Protein Structure Initiative and other worldwide high-throughput structural biology projects.

http://beta.sbkb.org/tt/

It is a merger of TargetDB? and PepcDB?.

New features in TargetTrack include:

* Ability to define complex targets, including targets made up of multiple protein and/or nucleic acid sequences, or targets comprised of references to existing single-sequence targets * Ability to define one or more ligands bound to the target, either at time of selection or during structural studies * New data items to capture biological information about the target, such as "target rationale", "target annotation", and "target protein type" * New data item "target partnership" to capture PSI:Biology collaboration information * Expanded controlled vocabulary for "status", "target category", "protocol type", "sequence type", and other enumeration data items

The current schemas for TargetDB? and PepcDB? will continue to be supported for select activities (such as PSI-2 and non-PSI projects); and TargetTrack will be backwards compatible for these files.

TargetDB?/PepcDB and TargetTrack will operate in parallel until the end of 2011. TargetDB?/PepcDB updates are still being accepted for the duration of this transition period.

Current database update schedule:

* PepcDB? is updated every Wednesday

* TargetDB? is updated every Thursday d82 2 * TargetTrack is updated every Friday

Our Targets

Protein ID Protein name Status
APB presenilin homolog cloned, expressed, purified
Changed:
<
<
APH1a subunit of y-secretase cloned, expressed, purified
>
>
AQP-1 plant aquaporin-2 cloned, expressed, purified, screened, crystallized
Deleted:
<
<
AQP-2 aquaporin-2  
 
CamB presenilin homolog cloned, expressed, purified
CamP presenilin homolog cloned, expressed, purified
CNR2 cannabinoid receptor 2  
CysZ sulfate transporter cloned, expressed, purified, screened
Changed:
<
<
EmrE-P1A12 Smr family mutidrug resistance protein cloned
EmrE-P1B12 multidrug efflux system protein MdtI cloned
EmrE-P1C5 SugE protein cloned
EmrE-P1D5 GroEL supressor protein SugE cloned
>
>
EmrE-P1A12 Smr family mutidrug resistance protein cloned, expressed, purified
EmrE-P1B12 multidrug efflux system protein MdtI cloned, expressed, purified
EmrE-P1C5 SugE protein cloned, expressed, purified, screened
EmrE-P1D5 GroEL supressor protein SugE cloned, expressed, purified, screened
 
EmrE-P1G12 multidrug efflux system protein MdtI cloned
FLVCR1 heme transporter  
GIRK1 G-activated inward rectifier K channel  
HAM presenilin homolog cloned, expressed, purified
HFV presenilin homolog cloned, expressed, purified
HTR1F 5HT receptor (GPCR)  
KdpA K pump subunit  
KdpB K pump subunit  
KdpC K pump subunit  
KdpF K pump subunit  
KirBac1.1 inward rectifier K channel  
MCMJR1 presenilin homolog cloned, expressed, purified, screened
MCV preflagellin peptidase cloned, expressed, purified, screened
Metev 1821 hypothetical protein Mev_1821 cloned
MHJF1 presenilin homolog cloned, expressed, purified, screened
MMS2 preflagellin peptidase cloned, expressed, purified, screened
Nicastrin subunit of y-secretase cloned, expressed, purified
PEN1 subunit of y-secretase  
PhoP two component response regulator  
PhoQ two component system histidine kinase  
PSN1 subunit of y-secretase cloned, expressed, purified
PT presenilin homolog cloned, expressed, purified
RHBDL2 rhomboid protease homolog cloned
Rho-1 rhomboid protease (native) cloned
Rhomboid AarA intramembrane serine protease cloned
TRPV2 transient receptor potential channel V2 cloned, expressed, purified, screened
UMA presenilin homolog cloned, expressed, purified
YdjZ-P4C6 DedA family membrane protein cloned
YdjZ-P4D5 DedA family membrane protein cloned
YdjZ-P4E7 predicted inner membrane protein cloned
YdjZ-P5B3 DedA family membrane protein cloned
YiiP-A181 zinc transporter cloned, expressed, purified, screened, crystallized
YkgB-11 hypothetical protein Z0378 cloned
YkgB-5 conserved inner membrane protein cloned
YkgB-6 hypothetical protein HP0565 cloned
YkgB-9 hypothetical protein BT_1541 cloned

d107 2

  • Set ALLOWTOPICVIEW =

-- RalphLasala - 01 May 2012

-- RalphLasala - 01 Jul 2011 * temimps_targettrack_july2011: 1st submission to TargetTrack (July 2011)

Changed:
<
<
META FILEATTACHMENT attachment="temimps_targettrack_july2011" attr="" comment="1st submission to TargetTrack (July 2011)" date="1318602778" name="temimps_targettrack_july2011" path="temimps_targettrack_july2011" size="274467" stream="temimps_targettrack_july2011" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attachment="ralph_oct18.ppt" attr="" comment="" date="1318895680" name="ralph_oct18.ppt" path="ralph_oct18.ppt" size="1473024" stream="ralph_oct18.ppt" user="Main.RalphLasala" version="1"
>
>		 * ralph_oct18.ppt: ralph_oct18.ppt
Added:
>
>		 * temimps_target_track_oct2011: 2nd submission to TargetTrack (October 2011)

META FILEATTACHMENT attr="" autoattached="1" comment="TargetDB submission (October 2011)" date="1319723771" name="temimps_targetdb_oct2011" path="temimps_targetdb_oct2011" size="38338" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="PepcDB submission (October 2011)" date="1319571498" name="temimps_pepcdb_oct2011" path="temimps_pepcdb_oct2011" size="1321257" user="Main.RalphLasala" version="1"
 
META FILEATTACHMENT attr="" autoattached="1" comment="TargetDB submission (November 2011)" date="1322572496" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attachment="TEMIMPS_targettrack_Nov2011" attr="" comment="TargetDB submission (November 2011)" date="1322572495" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" stream="TEMIMPS_targettrack_Nov2011" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="" date="1318895680" name="ralph_oct18.ppt" path="ralph_oct18.ppt" size="1473024" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="1st submission to TargetTrack (July 2011)" date="1318602779" name="temimps_targettrack_july2011" path="temimps_targettrack_july2011" size="274467" user="Main.RalphLasala" version="1"

Revision 417 Oct 2011 - Main.RalphLasala

 
META TOPICPARENT name="TemimpsGroup"

TargetTrack

TargetTrack, a target registration database, provides information on the experimental progress and status of targets selected for structural determination by the Protein Structure Initiative and other worldwide high-throughput structural biology projects.

http://beta.sbkb.org/tt/

It is a merger of TargetDB? and PepcDB?.

New features in TargetTrack include:

* Ability to define complex targets, including targets made up of multiple protein and/or nucleic acid sequences, or targets comprised of references to existing single-sequence targets * Ability to define one or more ligands bound to the target, either at time of selection or during structural studies * New data items to capture biological information about the target, such as "target rationale", "target annotation", and "target protein type" * New data item "target partnership" to capture PSI:Biology collaboration information * Expanded controlled vocabulary for "status", "target category", "protocol type", "sequence type", and other enumeration data items

The current schemas for TargetDB? and PepcDB? will continue to be supported for select activities (such as PSI-2 and non-PSI projects); and TargetTrack will be backwards compatible for these files.

TargetDB?/PepcDB and TargetTrack will operate in parallel until the end of 2011. TargetDB?/PepcDB updates are still being accepted for the duration of this transition period.

Current database update schedule:

* PepcDB? is updated every Wednesday

* TargetDB? is updated every Thursday d82 2 * TargetTrack is updated every Friday

Our Targets

Protein ID Protein name Status
APB presenilin homolog cloned, expressed, purified
APH1a subunit of y-secretase cloned, expressed, purified
AQP-2 aquaporin-2  
CamB presenilin homolog cloned, expressed, purified
CamP presenilin homolog cloned, expressed, purified
CNR2 cannabinoid receptor 2  
CysZ sulfate transporter cloned, expressed, purified, screened
EmrE-P1A12 Smr family mutidrug resistance protein cloned
EmrE-P1B12 multidrug efflux system protein MdtI cloned
EmrE-P1C5 SugE protein cloned
EmrE-P1D5 GroEL supressor protein SugE cloned
EmrE-P1G12 multidrug efflux system protein MdtI cloned
FLVCR1 heme transporter  
GIRK1 G-activated inward rectifier K channel  
HAM presenilin homolog cloned, expressed, purified
HFV presenilin homolog cloned, expressed, purified
HTR1F 5HT receptor (GPCR)  
KdpA K pump subunit  
KdpB K pump subunit  
KdpC K pump subunit  
KdpF K pump subunit  
KirBac1.1 inward rectifier K channel  
MCMJR1 presenilin homolog cloned, expressed, purified, screened
MCV preflagellin peptidase cloned, expressed, purified, screened
Metev 1821 hypothetical protein Mev_1821 cloned
MHJF1 presenilin homolog cloned, expressed, purified, screened
MMS2 preflagellin peptidase cloned, expressed, purified, screened
Nicastrin subunit of y-secretase cloned, expressed, purified
PEN1 subunit of y-secretase  
PhoP two component response regulator  
PhoQ two component system histidine kinase  
PSN1 subunit of y-secretase cloned, expressed, purified
PT presenilin homolog cloned, expressed, purified
RHBDL2 rhomboid protease homolog cloned
Rho-1 rhomboid protease (native) cloned
Rhomboid AarA intramembrane serine protease cloned
TRPV2 transient receptor potential channel V2 cloned, expressed, purified, screened
UMA presenilin homolog cloned, expressed, purified
YdjZ-P4C6 DedA family membrane protein cloned
YdjZ-P4D5 DedA family membrane protein cloned
YdjZ-P4E7 predicted inner membrane protein cloned
YdjZ-P5B3 DedA family membrane protein cloned
YiiP-A181 zinc transporter cloned, expressed, purified, screened, crystallized
YkgB-11 hypothetical protein Z0378 cloned
YkgB-5 conserved inner membrane protein cloned
YkgB-6 hypothetical protein HP0565 cloned
YkgB-9 hypothetical protein BT_1541 cloned

d107 2

  • Set ALLOWTOPICVIEW =

-- RalphLasala - 01 May 2012

-- RalphLasala - 01 Jul 2011

Added:
>
>		 * temimps_targettrack_july2011: 1st submission to TargetTrack (July 2011)
 
META FILEATTACHMENT attachment="temimps_targettrack_july2011" attr="" comment="1st submission to TargetTrack (July 2011)" date="1318602778" name="temimps_targettrack_july2011" path="temimps_targettrack_july2011" size="274467" stream="temimps_targettrack_july2011" user="Main.RalphLasala" version="1"
Added:
>
>
META FILEATTACHMENT attachment="ralph_oct18.ppt" attr="" comment="" date="1318895680" name="ralph_oct18.ppt" path="ralph_oct18.ppt" size="1473024" stream="ralph_oct18.ppt" user="Main.RalphLasala" version="1"
 
META FILEATTACHMENT attr="" autoattached="1" comment="TargetDB submission (November 2011)" date="1322572496" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attachment="TEMIMPS_targettrack_Nov2011" attr="" comment="TargetDB submission (November 2011)" date="1322572495" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" stream="TEMIMPS_targettrack_Nov2011" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="" date="1318895680" name="ralph_oct18.ppt" path="ralph_oct18.ppt" size="1473024" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="1st submission to TargetTrack (July 2011)" date="1318602779" name="temimps_targettrack_july2011" path="temimps_targettrack_july2011" size="274467" user="Main.RalphLasala" version="1"

Revision 314 Oct 2011 - Main.RalphLasala

 
META TOPICPARENT name="TemimpsGroup"

TargetTrack

TargetTrack, a target registration database, provides information on the experimental progress and status of targets selected for structural determination by the Protein Structure Initiative and other worldwide high-throughput structural biology projects.

http://beta.sbkb.org/tt/

It is a merger of TargetDB? and PepcDB?.

Deleted:
<
<		TargetTrack is designed to improve readibility of the experimental data provided, and to better support PSI:Biology and other new structural biology research activities. d23 1
 New features in TargetTrack include:

* Ability to define complex targets, including targets made up of multiple protein and/or nucleic acid sequences, or targets comprised of references to existing single-sequence targets * Ability to define one or more ligands bound to the target, either at time of selection or during structural studies * New data items to capture biological information about the target, such as "target rationale", "target annotation", and "target protein type" * New data item "target partnership" to capture PSI:Biology collaboration information * Expanded controlled vocabulary for "status", "target category", "protocol type", "sequence type", and other enumeration data items

The current schemas for TargetDB? and PepcDB? will continue to be supported for select activities (such as PSI-2 and non-PSI projects); and TargetTrack will be backwards compatible for these files.

TargetDB?/PepcDB and TargetTrack will operate in parallel until the end of 2011. TargetDB?/PepcDB updates are still being accepted for the duration of this transition period.

Current database update schedule:

Deleted:
<
<		The current database update schedule is as follows:
  * PepcDB? is updated every Wednesday

* TargetDB? is updated every Thursday d82 2 * TargetTrack is updated every Friday

Deleted:
<
<

References...

list:

d89 4
 

Our Targets

Protein ID Protein name Status
APB presenilin homolog cloned, expressed, purified
APH1a subunit of y-secretase cloned, expressed, purified
AQP-2 aquaporin-2  
CamB presenilin homolog cloned, expressed, purified
CamP presenilin homolog cloned, expressed, purified
CNR2 cannabinoid receptor 2  
CysZ sulfate transporter cloned, expressed, purified, screened
EmrE-P1A12 Smr family mutidrug resistance protein cloned
EmrE-P1B12 multidrug efflux system protein MdtI cloned
EmrE-P1C5 SugE protein cloned
EmrE-P1D5 GroEL supressor protein SugE cloned
EmrE-P1G12 multidrug efflux system protein MdtI cloned
FLVCR1 heme transporter  
GIRK1 G-activated inward rectifier K channel  
HAM presenilin homolog cloned, expressed, purified
HFV presenilin homolog cloned, expressed, purified
HTR1F 5HT receptor (GPCR)  
KdpA K pump subunit  
KdpB K pump subunit  
KdpC K pump subunit  
KdpF K pump subunit  
KirBac1.1 inward rectifier K channel  
MCMJR1 presenilin homolog cloned, expressed, purified, screened
MCV preflagellin peptidase cloned, expressed, purified, screened
Metev 1821 hypothetical protein Mev_1821 cloned
MHJF1 presenilin homolog cloned, expressed, purified, screened
MMS2 preflagellin peptidase cloned, expressed, purified, screened
Nicastrin subunit of y-secretase cloned, expressed, purified
PEN1 subunit of y-secretase  
PhoP two component response regulator  
PhoQ two component system histidine kinase  
PSN1 subunit of y-secretase cloned, expressed, purified
PT presenilin homolog cloned, expressed, purified
RHBDL2 rhomboid protease homolog cloned
Rho-1 rhomboid protease (native) cloned
Rhomboid AarA intramembrane serine protease cloned
TRPV2 transient receptor potential channel V2 cloned, expressed, purified, screened
UMA presenilin homolog cloned, expressed, purified
YdjZ-P4C6 DedA family membrane protein cloned
YdjZ-P4D5 DedA family membrane protein cloned
YdjZ-P4E7 predicted inner membrane protein cloned
YdjZ-P5B3 DedA family membrane protein cloned
YiiP-A181 zinc transporter cloned, expressed, purified, screened, crystallized
YkgB-11 hypothetical protein Z0378 cloned
YkgB-5 conserved inner membrane protein cloned
YkgB-6 hypothetical protein HP0565 cloned
YkgB-9 hypothetical protein BT_1541 cloned

d107 2

  • Set ALLOWTOPICVIEW =

-- RalphLasala - 01 May 2012

-- RalphLasala - 01 Jul 2011

META FILEATTACHMENT attachment="temimps_targettrack_july2011" attr="" comment="1st submission to TargetTrack (July 2011)" date="1318602778" name="temimps_targettrack_july2011" path="temimps_targettrack_july2011" size="274467" stream="temimps_targettrack_july2011" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="TargetDB submission (November 2011)" date="1322572496" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attachment="TEMIMPS_targettrack_Nov2011" attr="" comment="TargetDB submission (November 2011)" date="1322572495" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" stream="TEMIMPS_targettrack_Nov2011" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="" date="1318895680" name="ralph_oct18.ppt" path="ralph_oct18.ppt" size="1473024" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="1st submission to TargetTrack (July 2011)" date="1318602779" name="temimps_targettrack_july2011" path="temimps_targettrack_july2011" size="274467" user="Main.RalphLasala" version="1"

Revision 212 Oct 2011 - Main.RalphLasala

 
META TOPICPARENT name="TemimpsGroup"

TargetTrack

TargetTrack, a target registration database, provides information on the experimental progress and status of targets selected for structural determination by the Protein Structure Initiative and other worldwide high-throughput structural biology projects.

http://beta.sbkb.org/tt/

It is a merger of TargetDB? and PepcDB?.

TargetTrack is designed to improve readibility of the experimental data provided, and to better support PSI:Biology and other new structural biology research activities. d23 1 New features in TargetTrack include:

* Ability to define complex targets, including targets made up of multiple protein and/or nucleic acid sequences, or targets comprised of references to existing single-sequence targets * Ability to define one or more ligands bound to the target, either at time of selection or during structural studies * New data items to capture biological information about the target, such as "target rationale", "target annotation", and "target protein type" * New data item "target partnership" to capture PSI:Biology collaboration information * Expanded controlled vocabulary for "status", "target category", "protocol type", "sequence type", and other enumeration data items

The current schemas for TargetDB? and PepcDB? will continue to be supported for select activities (such as PSI-2 and non-PSI projects); and TargetTrack will be backwards compatible for these files.

TargetDB?/PepcDB and TargetTrack will operate in parallel until the end of 2011. TargetDB?/PepcDB updates are still being accepted for the duration of this transition period.

Current database update schedule: The current database update schedule is as follows:

* PepcDB? is updated every Wednesday

* TargetDB? is updated every Thursday d82 2 * TargetTrack is updated every Friday

References...

list:

d89 4

Our Targets

Protein ID Protein name Status
APB presenilin homolog cloned, expressed, purified
APH1a subunit of y-secretase cloned, expressed, purified
AQP-2 aquaporin-2  
CamB presenilin homolog cloned, expressed, purified
CamP presenilin homolog cloned, expressed, purified
CNR2 cannabinoid receptor 2  
CysZ sulfate transporter cloned, expressed, purified, screened
EmrE-P1A12 Smr family mutidrug resistance protein cloned
EmrE-P1B12 multidrug efflux system protein MdtI cloned
EmrE-P1C5 SugE protein cloned
EmrE-P1D5 GroEL supressor protein SugE cloned
EmrE-P1G12 multidrug efflux system protein MdtI cloned
FLVCR1 heme transporter  
GIRK1 G-activated inward rectifier K channel  
HAM presenilin homolog cloned, expressed, purified
HFV presenilin homolog cloned, expressed, purified
HTR1F 5HT receptor (GPCR)  
KdpA K pump subunit  
KdpB K pump subunit  
KdpC K pump subunit  
KdpF K pump subunit  
KirBac1.1 inward rectifier K channel  
MCMJR1 presenilin homolog cloned, expressed, purified, screened
MCV preflagellin peptidase cloned, expressed, purified, screened
Metev 1821 hypothetical protein Mev_1821 cloned
MHJF1 presenilin homolog cloned, expressed, purified, screened
MMS2 preflagellin peptidase cloned, expressed, purified, screened
Nicastrin subunit of y-secretase cloned, expressed, purified
PEN1 subunit of y-secretase  
PhoP two component response regulator  
PhoQ two component system histidine kinase  
PSN1 subunit of y-secretase cloned, expressed, purified
PT presenilin homolog cloned, expressed, purified
RHBDL2 rhomboid protease homolog cloned
Rho-1 rhomboid protease (native) cloned
Rhomboid AarA intramembrane serine protease cloned
TRPV2 transient receptor potential channel V2 cloned, expressed, purified, screened
UMA presenilin homolog cloned, expressed, purified
YdjZ-P4C6 DedA family membrane protein cloned
YdjZ-P4D5 DedA family membrane protein cloned
YdjZ-P4E7 predicted inner membrane protein cloned
YdjZ-P5B3 DedA family membrane protein cloned
YiiP-A181 zinc transporter cloned, expressed, purified, screened, crystallized
YkgB-11 hypothetical protein Z0378 cloned
YkgB-5 conserved inner membrane protein cloned
YkgB-6 hypothetical protein HP0565 cloned
YkgB-9 hypothetical protein BT_1541 cloned
Deleted:
<
<

Crystallization information

To improve quality of crystals (Iban):
  • dope (mix with a bit of another lipids, about 10 %)
  • begin with a mixture of detergents

Protein acquisition form: Protein_acquisition_form-Mar11.doc.

TEMIMPS targets timeline

September 2011

August 2011

July 2011

June 2011

May 2011

April 2011

Mar 2011

Feb 2011

January 2011

December 2010

2007-2009 - Summary of previous crystallization trials

a96 1

 d107 2

  • Set ALLOWTOPICVIEW =

-- RalphLasala - 01 May 2012

-- RalphLasala - 01 Jul 2011

META FILEATTACHMENT attachment="temimps_targettrack_july2011" attr="" comment="1st submission to TargetTrack (July 2011)" date="1318602778" name="temimps_targettrack_july2011" path="temimps_targettrack_july2011" size="274467" stream="temimps_targettrack_july2011" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="TargetDB submission (November 2011)" date="1322572496" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attachment="TEMIMPS_targettrack_Nov2011" attr="" comment="TargetDB submission (November 2011)" date="1322572495" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" stream="TEMIMPS_targettrack_Nov2011" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="" date="1318895680" name="ralph_oct18.ppt" path="ralph_oct18.ppt" size="1473024" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="1st submission to TargetTrack (July 2011)" date="1318602779" name="temimps_targettrack_july2011" path="temimps_targettrack_july2011" size="274467" user="Main.RalphLasala" version="1"

Revision 107 Oct 2011 - Main.RalphLasala

 
META TOPICPARENT name="TemimpsGroup"

TargetTrack

TargetTrack, a target registration database, provides information on the experimental progress and status of targets selected for structural determination by the Protein Structure Initiative and other worldwide high-throughput structural biology projects.

http://beta.sbkb.org/tt/

It is a merger of TargetDB? and PepcDB?.

TargetTrack is designed to improve readibility of the experimental data provided, and to better support PSI:Biology and other new structural biology research activities. d23 1 New features in TargetTrack include:

* Ability to define complex targets, including targets made up of multiple protein and/or nucleic acid sequences, or targets comprised of references to existing single-sequence targets * Ability to define one or more ligands bound to the target, either at time of selection or during structural studies * New data items to capture biological information about the target, such as "target rationale", "target annotation", and "target protein type" * New data item "target partnership" to capture PSI:Biology collaboration information * Expanded controlled vocabulary for "status", "target category", "protocol type", "sequence type", and other enumeration data items

The current schemas for TargetDB? and PepcDB? will continue to be supported for select activities (such as PSI-2 and non-PSI projects); and TargetTrack will be backwards compatible for these files.

TargetDB?/PepcDB and TargetTrack will operate in parallel until the end of 2011. TargetDB?/PepcDB updates are still being accepted for the duration of this transition period.

Current database update schedule: The current database update schedule is as follows:

* PepcDB? is updated every Wednesday

* TargetDB? is updated every Thursday d82 2 * TargetTrack is updated every Friday

References...

list:

d89 4

Our Targets

Protein ID Protein name Status
APB presenilin homolog cloned, expressed, purified
APH1a subunit of y-secretase cloned, expressed, purified
AQP-2 aquaporin-2  
CamB presenilin homolog cloned, expressed, purified
CamP presenilin homolog cloned, expressed, purified
CNR2 cannabinoid receptor 2  
CysZ sulfate transporter cloned, expressed, purified, screened
EmrE-P1A12 Smr family mutidrug resistance protein cloned
EmrE-P1B12 multidrug efflux system protein MdtI cloned
EmrE-P1C5 SugE protein cloned
EmrE-P1D5 GroEL supressor protein SugE cloned
EmrE-P1G12 multidrug efflux system protein MdtI cloned
FLVCR1 heme transporter  
GIRK1 G-activated inward rectifier K channel  
HAM presenilin homolog cloned, expressed, purified
HFV presenilin homolog cloned, expressed, purified
HTR1F 5HT receptor (GPCR)  
KdpA K pump subunit  
KdpB K pump subunit  
KdpC K pump subunit  
KdpF K pump subunit  
KirBac1.1 inward rectifier K channel  
MCMJR1 presenilin homolog cloned, expressed, purified, screened
MCV preflagellin peptidase cloned, expressed, purified, screened
Metev 1821 hypothetical protein Mev_1821 cloned
MHJF1 presenilin homolog cloned, expressed, purified, screened
MMS2 preflagellin peptidase cloned, expressed, purified, screened
Nicastrin subunit of y-secretase cloned, expressed, purified
PEN1 subunit of y-secretase  
PhoP two component response regulator  
PhoQ two component system histidine kinase  
PSN1 subunit of y-secretase cloned, expressed, purified
PT presenilin homolog cloned, expressed, purified
RHBDL2 rhomboid protease homolog cloned
Rho-1 rhomboid protease (native) cloned
Rhomboid AarA intramembrane serine protease cloned
TRPV2 transient receptor potential channel V2 cloned, expressed, purified, screened
UMA presenilin homolog cloned, expressed, purified
YdjZ-P4C6 DedA family membrane protein cloned
YdjZ-P4D5 DedA family membrane protein cloned
YdjZ-P4E7 predicted inner membrane protein cloned
YdjZ-P5B3 DedA family membrane protein cloned
YiiP-A181 zinc transporter cloned, expressed, purified, screened, crystallized
YkgB-11 hypothetical protein Z0378 cloned
YkgB-5 conserved inner membrane protein cloned
YkgB-6 hypothetical protein HP0565 cloned
YkgB-9 hypothetical protein BT_1541 cloned

Crystallization information

To improve quality of crystals (Iban):
  • dope (mix with a bit of another lipids, about 10 %)
  • begin with a mixture of detergents

Protein acquisition form: Protein_acquisition_form-Mar11.doc.

TEMIMPS targets timeline

September 2011

August 2011

July 2011

June 2011

May 2011

April 2011

Mar 2011

Feb 2011

January 2011

December 2010

2007-2009 - Summary of previous crystallization trials

a96 1 d107 2

  • Set ALLOWTOPICVIEW =

-- RalphLasala - 01 May 2012

-- RalphLasala - 01 Jul 2011

META FILEATTACHMENT attachment="temimps_targettrack_july2011" attr="" comment="1st submission to TargetTrack (July 2011)" date="1318602778" name="temimps_targettrack_july2011" path="temimps_targettrack_july2011" size="274467" stream="temimps_targettrack_july2011" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="TargetDB submission (November 2011)" date="1322572496" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attachment="TEMIMPS_targettrack_Nov2011" attr="" comment="TargetDB submission (November 2011)" date="1322572495" name="TEMIMPS_targettrack_Nov2011" path="TEMIMPS_targettrack_Nov2011" size="976669" stream="TEMIMPS_targettrack_Nov2011" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="" date="1318895680" name="ralph_oct18.ppt" path="ralph_oct18.ppt" size="1473024" user="Main.RalphLasala" version="1"
META FILEATTACHMENT attr="" autoattached="1" comment="1st submission to TargetTrack (July 2011)" date="1318602779" name="temimps_targettrack_july2011" path="temimps_targettrack_july2011" size="274467" user="Main.RalphLasala" version="1"
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