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Contents How to acquire authorization for independent use of microscopes at any hour of the dayThe electron microscopes are in principle available for ~20 hours per day for data collection. However, several requirements need to be met before independent use of the instruments is approved. 1). Meet requirements for 24 hour access to the NYSBC . 2). Special training on EM operation must be completed. Training will only apply to individual instruments, as each has slightly different requirements. The topics to be covered are listed below. 3). User will be given an opportunity to practice independent instrument use during normal working hours. When ready, user will then take an operational test with EM staff to establish final authorization for independent use.Session 1: Absolute Basics of operation
Session 2: General Setup of microscope
Session 3: Advanced Setup of Microscope
Session 4: Sample Insertion and Removal
Session 5: Emergency Procedures
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Contents
How to acquire authorization for independent use of microscopes at any hour of the dayThe electron microscopes are in principle available for ~20 hours per day for data collection. However, several requirements need to be met before independent use of the instruments is approved. 1). Meet requirements for 24 hour access to the NYSBC . 2). Special training on EM operation must be completed. Training will only apply to individual instruments, as each has slightly different requirements. The topics to be covered are listed below. 3). User will be given an opportunity to practice independent instrument use during normal working hours. When ready, user will then take an operational test with EM staff to establish final authorization for independent use.Session 1: Absolute Basics of operation
Session 2: General Setup of microscope
Session 3: Advanced Setup of Microscope
Session 4: Sample Insertion and Removal
Session 5: Emergency Procedures
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How to acquire authorization for independent use of microscopes at any hour of the dayThe electron microscopes are in principle available for ~20 hours per day for data collection. However, several requirements need to be met before independent use of the instruments is approved. 1). Meet requirements for 24 hour access to the NYSBC . 2). Special training on EM operation must be completed. Training will only apply to individual instruments, as each has slightly different requirements. The topics to be covered are listed below. 3). User will be given an opportunity to practice independent instrument use during normal working hours. When ready, user will then take an operational test with EM staff to establish final authorization for independent use.Session 1: Absolute Basics of operation
Session 2: General Setup of microscope
Session 3: Advanced Setup of Microscope
Session 4: Sample Insertion and Removal
Session 5: Emergency Procedures
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How to acquire authorization for independent use of microscopes at any hour of the dayThe electron microscopes are in principle available for ~20 hours per day for data collection. However, several requirements need to be met before independent use of the instruments is approved. 1). Meet requirements for 24 hour access to the NYSBC . 2). Special training on EM operation must be completed. Training will only apply to individual instruments, as each has slightly different requirements. The topics to be covered are listed below. 3). User will be given an opportunity to practice independent instrument use during normal working hours. When ready, user will then take an operational test with EM staff to establish final authorization for independent use.Session 1: Absolute Basics of operation
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| < < | General Setup of microscope | |||||||
| > > | Session 2: General Setup of microscope | |||||||
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| < < | Advanced Setup of Microscope | |||||||
| > > | Session 3: Advanced Setup of Microscope | |||||||
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| < < | Sample Insertion and Removal | |||||||
| > > | Session 4: Sample Insertion and Removal | |||||||
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| < < | Emergency Procedures | |||||||
| > > | Session 5: Emergency Procedures | |||||||
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| < < | AllHourAccessCEM? | |||||||
| > > | How to acquire authorization for independent use of microscopes at any hour of the day | |||||||
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| < < | How to use the microscopes at any hour of the day | |||||||
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| < < | The electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. To acquire all hour access, *the user must have met all the requirements for 24 hour access to the NYSBC*. The topics to be covered are the following: | |||||||
| > > | The electron microscopes are in principle available for ~20 hours per day for data collection. However, several requirements need to be met before independent use of the instruments is approved. | |||||||
| Changed: | ||||||||
| < < | Absolute Basics of operation | |||||||
| > > | 1). Meet requirements for 24 hour access to the NYSBC . | |||||||
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| < < | The user must undergo several training sessions, approved by the NYSBC staff, about the use of the particular instrument for which the approval is sought. The training will begin with the basics of operation of an electron microscope. | |||||||
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| > > | 2). Special training on EM operation must be completed. Training will only apply to individual instruments, as each has slightly different requirements. The topics to be covered are listed below.
3). User will be given an opportunity to practice independent instrument use during normal working hours. When ready, user will then take an operational test with EM staff to establish final authorization for independent use.
Session 1: Absolute Basics of operation | |||||||
General Setup of microscope | ||||||||
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| < < | Then the trainee will need to learn the following: | |||||||
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Advanced Setup of Microscope | ||||||||
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Sample Insertion and Removal | ||||||||
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| < < | After the training mentioned above, sample insertion and removal will be taught. The reasoning for this, is that sample insertion is the most frequent cause of vacuum breaches and goniometer breakdowns, therefore, it is desirable to leave it at the end, for those users that have already acquired familiarity with the instrument. | |||||||
Emergency Procedures | ||||||||
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| < < | Once these topics have been taught, information about common emergency procedures and precautions will be given, such as | |||||||
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| < < | Training will take place in ~5 sessions, with as many sessions for practice as needed. A practical exam will be administered to the users before they can be allowed to operate the instruments alone, keeping in mind that it is in everyone's best interest that the instruments are kept in a mint working condition, while maximizing the scientific productivity of all the users of the facility. | |||||||
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| < < | AllHourAccess? | |||||||
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How to use the microscopes at any hour of the dayThe electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. To acquire all hour access, *the user must have met all the requirements for 24 hour access to the NYSBC*. The topics to be covered are the following:Absolute Basics of operationThe user must undergo several training sessions, approved by the NYSBC staff, about the use of the particular instrument for which the approval is sought. The training will begin with the basics of operation of an electron microscope.
General Setup of microscopeThen the trainee will need to learn the following:
Advanced Setup of MicroscopeAfter these alignments, the trainee will need to learn
Sample Insertion and RemovalAfter the training mentioned above, sample insertion and removal will be taught. The reasoning for this, is that sample insertion is the most frequent cause of vacuum breaches and goniometer breakdowns, therefore, it is desirable to leave it at the end, for those users that have already acquired familiarity with the instrument.
Emergency ProceduresOnce these topics have been taught, information about common emergency procedures and precautions will be given, such as
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AllHourAccess?How to use the microscopes at any hour of the day | ||||||||
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| < < | The electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. To acquire all hour access, the user must have met all the requirements for 24 hour access to the NYSBC. The topics to be covered are the following: | |||||||
| > > | The electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. To acquire all hour access, *the user must have met all the requirements for 24 hour access to the NYSBC*. The topics to be covered are the following: | |||||||
Absolute Basics of operationThe user must undergo several training sessions, approved by the NYSBC staff, about the use of the particular instrument for which the approval is sought. The training will begin with the basics of operation of an electron microscope.
General Setup of microscopeThen the trainee will need to learn the following:
Advanced Setup of MicroscopeAfter these alignments, the trainee will need to learn
Sample Insertion and RemovalAfter the training mentioned above, sample insertion and removal will be taught. The reasoning for this, is that sample insertion is the most frequent cause of vacuum breaches and goniometer breakdowns, therefore, it is desirable to leave it at the end, for those users that have already acquired familiarity with the instrument.
Emergency ProceduresOnce these topics have been taught, information about common emergency procedures and precautions will be given, such as
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AllHourAccess?How to use the microscopes at any hour of the dayThe electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. To acquire all hour access, the user must have met all the requirements for 24 hour access to the NYSBC. The topics to be covered are the following:Absolute Basics of operationThe user must undergo several training sessions, approved by the NYSBC staff, about the use of the particular instrument for which the approval is sought. The training will begin with the basics of operation of an electron microscope.
General Setup of microscopeThen the trainee will need to learn the following:
Advanced Setup of MicroscopeAfter these alignments, the trainee will need to learn
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Sample Insertion and RemovalAfter the training mentioned above, sample insertion and removal will be taught. The reasoning for this, is that sample insertion is the most frequent cause of vacuum breaches and goniometer breakdowns, therefore, it is desirable to leave it at the end, for those users that have already acquired familiarity with the instrument.
Emergency ProceduresOnce these topics have been taught, information about common emergency procedures and precautions will be given, such as | ||||||||
| Added: | ||||||||
| > > |
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AllHourAccess?How to use the microscopes at any hour of the dayThe electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. To acquire all hour access, the user must have met all the requirements for 24 hour access to the NYSBC. The topics to be covered are the following:Absolute Basics of operationThe user must undergo several training sessions, approved by the NYSBC staff, about the use of the particular instrument for which the approval is sought. The training will begin with the basics of operation of an electron microscope.
General Setup of microscopeThen the trainee will need to learn the following:
Advanced Setup of MicroscopeAfter these alignments, the trainee will need to learn
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| Added: | ||||||||
| > > |
| |||||||
Sample Insertion and RemovalAfter the training mentioned above, sample insertion and removal will be taught. The reasoning for this, is that sample insertion is the most frequent cause of vacuum breaches and goniometer breakdowns, therefore, it is desirable to leave it at the end, for those users that have already acquired familiarity with the instrument.
Emergency ProceduresOnce these topics have been taught, information about common emergency procedures and precautions will be given, such as
| ||||||||
AllHourAccess?How to use the microscopes at any hour of the dayThe electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. To acquire all hour access, the user must have met all the requirements for 24 hour access to the NYSBC. The topics to be covered are the following:Absolute Basics of operationThe user must undergo several training sessions, approved by the NYSBC staff, about the use of the particular instrument for which the approval is sought. The training will begin with the basics of operation of an electron microscope. | ||||||||
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General Setup of microscopeThen the trainee will need to learn the following: | ||||||||
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| < < | b. How to correct for condenser astigmatism c. How to align the spot sizes d. How to align the pivot points e. How to introduce an objective aperture. f. How to correct for objective astigmatism | |||||||
Advanced Setup of MicroscopeAfter these alignments, the trainee will need to learn | ||||||||
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| > > |
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| > > |
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| < < | b. If necessary, how to set up SerialEM in low-dose mode. How to set up and collect a tilt series. Microscope alignments to be particularly careful about for proper operation of SerialEM. c. Flatfield correction for the CCD camera. Gain adjustments and other features of the CCD control program (EM menu). Film settings. d. Refresh rate of the fast scan camera. e. Diffraction mode. How to get electron diffraction patterns | |||||||
Sample Insertion and RemovalAfter the training mentioned above, sample insertion and removal will be taught. The reasoning for this, is that sample insertion is the most frequent cause of vacuum breaches and goniometer breakdowns, therefore, it is desirable to leave it at the end, for those users that have already acquired familiarity with the instrument. | ||||||||
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| < < | b. Use of the cryoholder at room temperature. Loading of specimen and procedure for insertion of cryoholder into the mocroscope. c. Loading of frozen hydrated sample in the cryoholder and insertion into the microscope. Monitoring of temperature stability. d. Vacuum state of the microscope. What values should be reading in the different gauges and what to do when vacuum is poor. | |||||||
Emergency ProceduresOnce these topics have been taught, information about common emergency procedures and precautions will be given, such as | ||||||||
| Changed: | ||||||||
| < < |
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| > > |
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| Deleted: | ||||||||
| < < | e. Precautions to be followed with liquid nitrogen f. Precautions to be followed with liquid ethane g. Etiquette of the electron microscopy facility | |||||||
Training will take place in ~5 sessions, with as many sessions for practice as needed. A practical exam will be administered to the users before they can be allowed to operate the instruments alone, keeping in mind that it is in everyone's best interest that the instruments are kept in a mint working condition, while maximizing the scientific productivity of all the users of the facility.
| ||||||||
AllHourAccess?How to use the microscopes at any hour of the dayThe electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. To acquire all hour access, the user must have met all the requirements for 24 hour access to the NYSBC. The topics to be covered are the following:Absolute Basics of operationThe user must undergo several training sessions, approved by the NYSBC staff, about the use of the particular instrument for which the approval is sought. The training will begin with the basics of operation of an electron microscope.
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| < < | b. How to adjust the eucentric height of the specimen | |||||||
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| < < | c. How to adjust the intensity of the beam | |||||||
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| < < | d. How to focus the image | |||||||
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| < < | e. How to change magnification | |||||||
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| < < | f. How to introduce and center a condenser aperture | |||||||
| > > |
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General Setup of microscopeThen the trainee will need to learn the following:
Advanced Setup of MicroscopeAfter these alignments, the trainee will need to learn
Sample Insertion and RemovalAfter the training mentioned above, sample insertion and removal will be taught. The reasoning for this, is that sample insertion is the most frequent cause of vacuum breaches and goniometer breakdowns, therefore, it is desirable to leave it at the end, for those users that have already acquired familiarity with the instrument.
Emergency ProceduresOnce these topics have been taught, information about common emergency procedures and precautions will be given, such as
| ||||||||
AllHourAccess?How to use the microscopes at any hour of the dayThe electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. To acquire all hour access, the user must have met all the requirements for 24 hour access to the NYSBC. The topics to be covered are the following:Absolute Basics of operationThe user must undergo several training sessions, approved by the NYSBC staff, about the use of the particular instrument for which the approval is sought. The training will begin with the basics of operation of an electron microscope. | ||||||||
| Changed: | ||||||||
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| > > |
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| Changed: | ||||||||
| < < | ii. How to adjust the eucentric height of the specimen | |||||||
| > > | b. How to adjust the eucentric height of the specimen | |||||||
| Changed: | ||||||||
| < < | iii. How to adjust the intensity of the beam | |||||||
| > > | c. How to adjust the intensity of the beam | |||||||
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| < < |
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| > > | d. How to focus the image | |||||||
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| > > | e. How to change magnification | |||||||
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| < < |
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| > > | f. How to introduce and center a condenser aperture | |||||||
General Setup of microscopeThen the trainee will need to learn the following: | ||||||||
| Changed: | ||||||||
| < < |
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| > > |
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| < < |
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| > > | b. How to correct for condenser astigmatism | |||||||
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| > > | c. How to align the spot sizes | |||||||
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| < < |
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| > > | d. How to align the pivot points | |||||||
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| < < |
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| > > | e. How to introduce an objective aperture. | |||||||
| Changed: | ||||||||
| < < |
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| > > | f. How to correct for objective astigmatism | |||||||
Advanced Setup of MicroscopeAfter these alignments, the trainee will need to learn | ||||||||
| Changed: | ||||||||
| < < |
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| > > |
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| Changed: | ||||||||
| < < | ||||||||
| > > | b. If necessary, how to set up SerialEM in low-dose mode. How to set up and collect a tilt series. Microscope alignments to be particularly careful about for proper operation of SerialEM. | |||||||
| Changed: | ||||||||
| < < |
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| > > | c. Flatfield correction for the CCD camera. Gain adjustments and other features of the CCD control program (EM menu). Film settings. | |||||||
| Changed: | ||||||||
| < < |
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| > > | d. Refresh rate of the fast scan camera. | |||||||
| Changed: | ||||||||
| < < |
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| > > | e. Diffraction mode. How to get electron diffraction patterns | |||||||
Sample Insertion and RemovalAfter the training mentioned above, sample insertion and removal will be taught. The reasoning for this, is that sample insertion is the most frequent cause of vacuum breaches and goniometer breakdowns, therefore, it is desirable to leave it at the end, for those users that have already acquired familiarity with the instrument. | ||||||||
| Changed: | ||||||||
| < < |
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| > > |
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| Changed: | ||||||||
| < < |
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| > > | b. Use of the cryoholder at room temperature. Loading of specimen and procedure for insertion of cryoholder into the mocroscope. | |||||||
| Changed: | ||||||||
| < < |
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| > > | c. Loading of frozen hydrated sample in the cryoholder and insertion into the microscope. Monitoring of temperature stability. | |||||||
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| < < |
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| > > | d. Vacuum state of the microscope. What values should be reading in the different gauges and what to do when vacuum is poor. | |||||||
Emergency ProceduresOnce these topics have been taught, information about common emergency procedures and precautions will be given, such as | ||||||||
| Changed: | ||||||||
| < < |
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| > > |
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| Changed: | ||||||||
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| > > | b. What to do if the beam shuts down | |||||||
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| > > | c. What to do if the lenses are not responding | |||||||
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| > > | d. What to do if there is water leaking | |||||||
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| > > | e. Precautions to be followed with liquid nitrogen | |||||||
| Changed: | ||||||||
| < < |
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| > > | f. Precautions to be followed with liquid ethane | |||||||
| Changed: | ||||||||
| < < |
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| > > | g. Etiquette of the electron microscopy facility | |||||||
Training will take place in ~5 sessions, with as many sessions for practice as needed. A practical exam will be administered to the users before they can be allowed to operate the instruments alone, keeping in mind that it is in everyone's best interest that the instruments are kept in a mint working condition, while maximizing the scientific productivity of all the users of the facility.
| ||||||||
AllHourAccess?How to use the microscopes at any hour of the dayThe electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. To acquire all hour access, the user must have met all the requirements for 24 hour access to the NYSBC. The topics to be covered are the following:Absolute Basics of operationThe user must undergo several training sessions, approved by the NYSBC staff, about the use of the particular instrument for which the approval is sought. The training will begin with the basics of operation of an electron microscope.
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| Changed: | ||||||||
| < < |
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| > > | ii. How to adjust the eucentric height of the specimen | |||||||
| Changed: | ||||||||
| < < |
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| > > | iii. How to adjust the intensity of the beam | |||||||
General Setup of microscopeThen the trainee will need to learn the following:
Advanced Setup of MicroscopeAfter these alignments, the trainee will need to learn
Sample Insertion and RemovalAfter the training mentioned above, sample insertion and removal will be taught. The reasoning for this, is that sample insertion is the most frequent cause of vacuum breaches and goniometer breakdowns, therefore, it is desirable to leave it at the end, for those users that have already acquired familiarity with the instrument.
Emergency ProceduresOnce these topics have been taught, information about common emergency procedures and precautions will be given, such as
| ||||||||
AllHourAccess?How to use the microscopes at any hour of the dayThe electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. To acquire all hour access, the user must have met all the requirements for 24 hour access to the NYSBC. The topics to be covered are the following:Absolute Basics of operationThe user must undergo several training sessions, approved by the NYSBC staff, about the use of the particular instrument for which the approval is sought. The training will begin with the basics of operation of an electron microscope. | ||||||||
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| > > |
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General Setup of microscopeThen the trainee will need to learn the following:
Advanced Setup of MicroscopeAfter these alignments, the trainee will need to learn
Sample Insertion and RemovalAfter the training mentioned above, sample insertion and removal will be taught. The reasoning for this, is that sample insertion is the most frequent cause of vacuum breaches and goniometer breakdowns, therefore, it is desirable to leave it at the end, for those users that have already acquired familiarity with the instrument.
Emergency Procedures | ||||||||
| Changed: | ||||||||
| < < | Once these topics have been taught, emergency procedures will be taught, such as | |||||||
| > > | Once these topics have been taught, information about common emergency procedures and precautions will be given, such as | |||||||
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AllHourAccess?How to use the microscopes at any hour of the dayThe electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. To acquire all hour access, the user must have met all the requirements for 24 hour access to the NYSBC. The topics to be covered are the following:Absolute Basics of operationThe user must undergo several training sessions, approved by the NYSBC staff, about the use of the particular instrument for which the approval is sought. The training will begin with the basics of operation of an electron microscope.
General Setup of microscopeThen the trainee will need to learn the following:
Advanced Setup of MicroscopeAfter these alignments, the trainee will need to learn
Sample Insertion and RemovalAfter the training mentioned above, sample insertion and removal will be taught. The reasoning for this, is that sample insertion is the most frequent cause of vacuum breaches and goniometer breakdowns, therefore, it is desirable to leave it at the end, for those users that have already acquired familiarity with the instrument.
Emergency ProceduresOnce these topics have been taught, emergency procedures will be taught, such as
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| Changed: | ||||||||
| < < |
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| > > |
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Training will take place in ~5 sessions, with as many sessions for practice as needed. A practical exam will be administered to the users before they can be allowed to operate the instruments alone, keeping in mind that it is in everyone's best interest that the instruments are kept in a mint working condition, while maximizing the scientific productivity of all the users of the facility.
| ||||||||
AllHourAccess?How to use the microscopes at any hour of the day | ||||||||
| Changed: | ||||||||
| < < | The electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. To acquire all hour access, the user must have met all the requirements for 24 hour access to the NYSBC. The main requirements are the following: | |||||||
| > > | The electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. To acquire all hour access, the user must have met all the requirements for 24 hour access to the NYSBC. The topics to be covered are the following: | |||||||
Absolute Basics of operationThe user must undergo several training sessions, approved by the NYSBC staff, about the use of the particular instrument for which the approval is sought. The training will begin with the basics of operation of an electron microscope. | ||||||||
| Changed: | ||||||||
| < < | a) How to get an electron beam | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | b) How to adjust the eucentric height of the specimen | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | c) How to adjust the intensity of the beam | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | d) How to focus the image | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | e) How to change magnification | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | f) How to introduce and center a condenser aperture | |||||||
| > > |
| |||||||
General Setup of microscopeThen the trainee will need to learn the following: | ||||||||
| Changed: | ||||||||
| < < | a) How to align the optical axis of the instrument | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | b) How to correct for condenser astigmatism | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | c) How to align the spot sizes | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | d) How to align the pivot points | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | e) How to introduce an objective aperture. | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | f) How to correct for objective astigmatism | |||||||
| > > |
| |||||||
Advanced Setup of MicroscopeAfter these alignments, the trainee will need to learn | ||||||||
| Changed: | ||||||||
| < < | a) How to set up the low dose kit of the microscope. Set up of search mode using the fast scan camera and/or binoculars; focus mode at a suitably high magnification; set up of the proper imaging conditions (electron dose to be given to the sample, exposure time required). | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | b) If necessary, how to set up SerialEM in low-dose mode. How to set up and collect a tilt series. Microscope alignments to be particularly careful about for proper operation of SerialEM. | |||||||
| > > | ||||||||
| Changed: | ||||||||
| < < | b) Flatfield correction for the CCD camera. Gain adjustments and other features of the CCD control program (EM menu). Film settings. | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | c) Refresh rate of the fast scan camera. | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | d) Diffraction mode. How to get electron diffraction patterns | |||||||
| > > |
| |||||||
Sample Insertion and RemovalAfter the training mentioned above, sample insertion and removal will be taught. The reasoning for this, is that sample insertion is the most frequent cause of vacuum breaches and goniometer breakdowns, therefore, it is desirable to leave it at the end, for those users that have already acquired familiarity with the instrument. | ||||||||
| Changed: | ||||||||
| < < | a) Sample insertion and removal with the room temperature holder. Loading of negative stained grids, and their removal. | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | b) Use of the cryoholder at room temperature. Loading of specimen and procedure for insertion of cryoholder into the mocroscope. | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | c) Loading of frozen hydrated sample in the cryoholder and insertion into the microscope. Monitoring of temperature stability. | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | d) Vacuum state of the microscope. What values should be reading in the different gauges and what to do when vacuum is poor. | |||||||
| > > |
| |||||||
Emergency ProceduresOnce these topics have been taught, emergency procedures will be taught, such as | ||||||||
| Changed: | ||||||||
| < < | a) What to do in case the vacuum breaks | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | b) What to do if the beam shuts down | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | c) What to do if the lenses are not responding | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | d) What to do if there is water leaking | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | e) Precautions to be followed with liquid nitrogen | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | f) Precautions to be followed with liquid ethane | |||||||
| > > |
| |||||||
| Changed: | ||||||||
| < < | g) Etiquette of the electron microscopy facility | |||||||
| > > |
| |||||||
Training will take place in ~5 sessions, with as many sessions for practice as needed. A practical exam will be administered to the users before they can be allowed to operate the instruments alone, keeping in mind that it is in everyone's best interest that the instruments are kept in a mint working condition, while maximizing the scientific productivity of all the users of the facility.
| ||||||||
AllHourAccess?How to use the microscopes at any hour of the day | ||||||||
| Changed: | ||||||||
| < < | The electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. The main requirements are the following: | |||||||
| > > | The electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. To acquire all hour access, the user must have met all the requirements for 24 hour access to the NYSBC. The main requirements are the following: | |||||||
| Deleted: | ||||||||
| < < | 1. The user must have met all the requirements for 24 hour access to the NYSBC. | |||||||
Absolute Basics of operation | ||||||||
| Changed: | ||||||||
| < < | 2. The user must undergo several training sessions, approved by the NYSBC staff, about the use of the particular instrument for which the approval is sought. The training will begin with the basics of operation of an electron microscope. | |||||||
| > > | The user must undergo several training sessions, approved by the NYSBC staff, about the use of the particular instrument for which the approval is sought. The training will begin with the basics of operation of an electron | |||||||
| Added: | ||||||||
| > > | microscope. | |||||||
| a) How to get an electron beam b) How to adjust the eucentric height of the specimen c) How to adjust the intensity of the beam d) How to focus the image e) How to change magnification | ||||||||
| Added: | ||||||||
| > > | f) How to introduce and center a condenser aperture | |||||||
General Setup of microscopeThen the trainee will need to learn the following: | ||||||||
| Changed: | ||||||||
| < < | a) How to put and center a condenser aperture | |||||||
| > > | a) How to align the optical axis of the instrument | |||||||
| Changed: | ||||||||
| < < | b) How to align the optical axis of the instrument | |||||||
| > > | b) How to correct for condenser astigmatism | |||||||
| Changed: | ||||||||
| < < | c) How to correct for condenser astigmatism | |||||||
| > > | c) How to align the spot sizes | |||||||
| d) How to align the pivot points e) How to introduce an objective aperture. f) How to correct for objective astigmatism | ||||||||
| Deleted: | ||||||||
| < < | ||||||||
Advanced Setup of MicroscopeAfter these alignments, the trainee will need to learn a) How to set up the low dose kit of the microscope. Set up of search mode using the fast scan camera and/or binoculars; focus mode at a suitably high magnification; set up of the proper imaging conditions (electron dose to be given to the sample, exposure time required). b) If necessary, how to set up SerialEM in low-dose mode. How to set up and collect a tilt series. Microscope alignments to be particularly careful about for proper operation of SerialEM. | ||||||||
| Changed: | ||||||||
| < < | b) Flatfield correction for the CCD camera. | |||||||
| > > | b) Flatfield correction for the CCD camera. Gain adjustments and other features of the CCD control program (EM menu). Film settings. | |||||||
| Changed: | ||||||||
| < < | c) Flatfield correction and refresh rate of the fast scan camera (I don't think flatfield collection for this camera is necessary for 24 hour users. Do we really want anyone else fiddling with this? -- Bill) | |||||||
| > > | c) Refresh rate of the fast scan camera. | |||||||
| d) Diffraction mode. How to get electron diffraction patterns | ||||||||
| Changed: | ||||||||
| < < | After the training mentioned above, sample insertion will be taught. The reasoning for this, is that sample insertion is the most frequent cause of vacuum breaches and goniometer breakdowns, therefore, it is desirable to leave it at the end, for those users that have already acquired familiarity with the instrument. | |||||||
| > > | Sample Insertion and Removal | |||||||
| Added: | ||||||||
| > > | After the training mentioned above, sample insertion and removal will be taught. The reasoning for this, is that sample insertion is the most frequent cause of vacuum breaches and goniometer breakdowns, therefore, it is desirable to leave it at the end, for those users that have already acquired familiarity with the instrument. a) Sample insertion and removal with the room temperature holder. Loading of negative stained grids, and their removal. b) Use of the cryoholder at room temperature. Loading of specimen and procedure for insertion of cryoholder into the mocroscope. c) Loading of frozen hydrated sample in the cryoholder and insertion into the microscope. Monitoring of temperature stability. d) Vacuum state of the microscope. What values should be reading in the different gauges and what to do when vacuum is poor. | |||||||
Emergency ProceduresOnce these topics have been taught, emergency procedures will be taught, such as a) What to do in case the vacuum breaks b) What to do if the beam shuts down c) What to do if the lenses are not responding | ||||||||
| Added: | ||||||||
| > > | d) What to do if there is water leaking | |||||||
| Added: | ||||||||
| > > | e) Precautions to be followed with liquid nitrogen f) Precautions to be followed with liquid ethane g) Etiquette of the electron microscopy facility Training will take place in ~5 sessions, with as many sessions for practice as needed. A practical exam will be administered to the users before they can be allowed to operate the instruments alone, keeping in mind that it is in everyone's best interest that the instruments are kept in a mint working condition, while maximizing the scientific productivity of all the users of the facility. | |||||||
| ||||||||
AllHourAccess?How to use the microscopes at any hour of the dayThe electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. The main requirements are the following: 1. The user must have met all the requirements for 24 hour access to the NYSBC. | ||||||||
| Added: | ||||||||
| > > | Absolute Basics of operation | |||||||
| 2. The user must undergo several training sessions, approved by the NYSBC staff, about the use of the particular instrument for which the approval is sought. The training will begin with the basics of operation of an electron microscope. a) How to get an electron beam b) How to adjust the eucentric height of the specimen c) How to adjust the intensity of the beam d) How to focus the image e) How to change magnification | ||||||||
| Added: | ||||||||
| > > | General Setup of microscope | |||||||
| Then the trainee will need to learn the following: a) How to put and center a condenser aperture b) How to align the optical axis of the instrument c) How to correct for condenser astigmatism d) How to align the pivot points e) How to introduce an objective aperture. | ||||||||
| Added: | ||||||||
| > > | f) How to correct for objective astigmatism
Advanced Setup of Microscope | |||||||
| After these alignments, the trainee will need to learn a) How to set up the low dose kit of the microscope. Set up of search mode using the fast scan camera and/or binoculars; focus mode at a suitably high magnification; set up of the proper imaging conditions (electron dose to be given to the sample, exposure time required). | ||||||||
| Added: | ||||||||
| > > | b) If necessary, how to set up SerialEM in low-dose mode. How to set up and collect a tilt series. Microscope alignments to be particularly careful about for proper operation of SerialEM. | |||||||
| b) Flatfield correction for the CCD camera. | ||||||||
| Changed: | ||||||||
| < < | c) Flatfield correction and refresh rate of the fast scan camera | |||||||
| > > | c) Flatfield correction and refresh rate of the fast scan camera (I don't think flatfield collection for this camera is necessary for 24 hour users. Do we really want anyone else fiddling with this? -- Bill) | |||||||
| d) Diffraction mode. How to get electron diffraction patterns After the training mentioned above, sample insertion will be taught. The reasoning for this, is that sample insertion is the most frequent cause of vacuum breaches and goniometer breakdowns, therefore, it is desirable to leave it at the end, for those users that have already acquired familiarity with the instrument. | ||||||||
| Added: | ||||||||
| > > | Emergency Procedures | |||||||
| Once these topics have been taught, emergency procedures will be taught, such as a) What to do in case the vacuum breaks b) What to do if the beam shuts down c) What to do if the lenses are not responding | ||||||||
| Changed: | ||||||||
| < < | subsub level topic | |||||||
| > > | ||||||||
| ||||||||
AllHourAccess?How to use the microscopes at any hour of the dayThe electron microscopes are in principle available for ~20 hours per day for data collection. However, due to the fact that staff is not available at all hours, several requirements need to be met before open access to the instruments can be granted. Open access will be given for individual instruments, as each instrument has slightly different requirements. The main requirements are the following: 1. The user must have met all the requirements for 24 hour access to the NYSBC. 2. The user must undergo several training sessions, approved by the NYSBC staff, about the use of the particular instrument for which the approval is sought. The training will begin with the basics of operation of an electron microscope. a) How to get an electron beam b) How to adjust the eucentric height of the specimen c) How to adjust the intensity of the beam d) How to focus the image e) How to change magnification Then the trainee will need to learn the following: a) How to put and center a condenser aperture b) How to align the optical axis of the instrument c) How to correct for condenser astigmatism d) How to align the pivot points e) How to introduce an objective aperture. After these alignments, the trainee will need to learn a) How to set up the low dose kit of the microscope. Set up of search mode using the fast scan camera and/or binoculars; focus mode at a suitably high magnification; set up of the proper imaging conditions (electron dose to be given to the sample, exposure time required). b) Flatfield correction for the CCD camera. c) Flatfield correction and refresh rate of the fast scan camera d) Diffraction mode. How to get electron diffraction patterns After the training mentioned above, sample insertion will be taught. The reasoning for this, is that sample insertion is the most frequent cause of vacuum breaches and goniometer breakdowns, therefore, it is desirable to leave it at the end, for those users that have already acquired familiarity with the instrument. Once these topics have been taught, emergency procedures will be taught, such as a) What to do in case the vacuum breaks b) What to do if the beam shuts down c) What to do if the lenses are not respondingsubsub level topic
|