Principles & Protocols

Protocols - Freeze Substitution

Jump to Principles

Instructions for preparing FS solutions

1. Label, with the #2 pencil, about 35 Nalgene 2.0 ml cryovials.
2. Put vials in vial rack with tops off.
3. Make up stock solution of 5% uranyl acetate in methanol by adding 0.1 g of uranyl acetate to 2 ml pure methanol, cover with foil and put on rocker to dissolve. It should dissolve in about 10 minutes, but if it doesn't, just let it rock longer. Different vintages of uranyl acetate crystals seem to dissolve at different rates.

1. Fill 50 ml conical tube with 45 ml pure acetone.

1. Use repeater pipettor to dispense 1.5 ml into each cryovial. Work quickly, but not carelessly. Cap cryovials as soon as they are filled.
2. Add LN2 to Styrafoam box to a level that will cover cryovials in rack.
3. Slowly lower rack into LN2. Vials must remain upright so fixative will remain in the bottom of the vial.
4. When completely frozen, transfer vials to LN2 storage device until ready to use.

• Sample record sheet:

Equipment operation

• Wear oxygen monitor and fill AFS through funnel with liquid nitrogen.
• Warm up sample well to 30C for 30 min to remove all moisture.
• After heat cycle fill sample well with reagent methanol
• Program substitution sequence
  • If a sequence is running press pause and hold until you hear three beeps
• Begin program and pause until starting temperature is reached
• Insert samples into AFS sample well
• Begin freeze substitution cycle

Finally

• Rinse 3x with dehydrated acetone for 1h each
• Infiltrate with resin

• Set ALLOWTOPICVIEW =

-- KdDerr - 02 Sep 2009

Principles & Protocols

Protocols - Freeze Substitution

Jump to Principles

Instructions for preparing FS solutions

1. Label, with the #2 pencil, about 35 Nalgene 2.0 ml cryovials.
2. Put vials in vial rack with tops off.
3. Make up stock solution of 5% uranyl acetate in methanol by adding 0.1 g of uranyl acetate to 2 ml pure methanol, cover with foil and put on rocker to dissolve. It should dissolve in about 10 minutes, but if it doesn't, just let it rock longer. Different vintages of uranyl acetate crystals seem to dissolve at different rates.
4. Dip a 1 g OsO4^? ampule for about 10 seconds into liquid nitrogen to loosen crystals from glass.
5. Fill 50 ml conical tube with 45 ml pure acetone.
6. Add 1 g OsO4^? crystals to the 45 ml of acetone, cover and mix until completely dissolved.
7. Add 1 ml 5% uranyl acetate stock to OsO4^?-acetone, add pure acetone to make 50 ml and mix well.
8. Use repeater pipettor to dispense 1.5 ml into each cryovial. Work quickly, but not carelessly. Cap cryovials as soon as they are filled.
9. Add LN2 to Styrafoam box to a level that will cover cryovials in rack.
10. Slowly lower rack into LN2. Vials must remain upright so fixative will remain in the bottom of the vial.
11. When completely frozen, transfer vials to LN2 storage device until ready to use.

• Sample record sheet:

Equipment operation

• Wear oxygen monitor and fill AFS through funnel with liquid nitrogen.
• Warm up sample well to 30C for 30 min to remove all moisture.
• After heat cycle fill sample well with reagent methanol
• Program substitution sequence
  • If a sequence is running press pause and hold until you hear three beeps
• Begin program and pause until starting temperature is reached
• Insert samples into AFS sample well
• Begin freeze substitution cycle

• Set ALLOWTOPICVIEW =

-- KdDerr - 02 Sep 2009

Principles & Protocols

Protocols - Freeze Substitution

Jump to Principles

Instructions for preparing FS solutions

1. Label, with the #2 pencil, about 35 Nalgene 2.0 ml cryovials.
2. Put vials in vial rack with tops off.
3. Make up stock solution of 5% uranyl acetate in methanol by adding 0.1 g of uranyl acetate to 2 ml pure methanol, cover with foil and put on rocker to dissolve. It should dissolve in about 10 minutes, but if it doesn't, just let it rock longer. Different vintages of uranyl acetate crystals seem to dissolve at different rates.
4. Dip a 1 g OsO4^? ampule for about 10 seconds into liquid nitrogen to loosen crystals from glass.
5. Fill 50 ml conical tube with 45 ml pure acetone.
6. Add 1 g OsO4^? crystals to the 45 ml of acetone, cover and mix until completely dissolved.
7. Add 1 ml 5% uranyl acetate stock to OsO4^?-acetone, add pure acetone to make 50 ml and mix well.
8. Use repeater pipettor to dispense 1.5 ml into each cryovial. Work quickly, but not carelessly. Cap cryovials as soon as they are filled.
9. Add LN2 to Styrafoam box to a level that will cover cryovials in rack.
10. Slowly lower rack into LN2. Vials must remain upright so fixative will remain in the bottom of the vial.
11. When completely frozen, transfer vials to LN2 storage device until ready to use.

• Sample record sheet:

Equipment operation

• Wear oxygen monitor and fill AFS through funnel with liquid nitrogen.
• Warm up sample well to 30C for 30 min to remove all moisture.
• After heat cycle fill sample well with reagent methanol
• Program substitution sequence
  • If a sequence is running press pause and hold until you hear three beeps
• Begin program and pause until starting temperature is reached
• Insert samples into AFS sample well
• Begin freeze substitution cycle

• Set ALLOWTOPICVIEW =

-- KdDerr - 02 Sep 2009

Principles & Protocols

Protocols - Freeze Substitution

Jump to Principles

1. Label, with the #2 pencil, about 35 Nalgene 2.0 ml cryovials.
2. Put vials in vial rack with tops off.
3. Make up stock solution of 5% uranyl acetate in methanol by adding 0.1 g of uranyl acetate to 2 ml pure methanol, cover with foil and put on rocker to dissolve. It should dissolve in about 10 minutes, but if it doesn't, just let it rock longer. Different vintages of uranyl acetate crystals seem to dissolve at different rates.
4. Dip a 1 g OsO4^? ampule for about 10 seconds into liquid nitrogen to loosen crystals from glass.
5. Fill 50 ml conical tube with 45 ml pure acetone.
6. Add 1 g OsO4^? crystals to the 45 ml of acetone, cover and mix until completely dissolved.
7. Add 1 ml 5% uranyl acetate stock to OsO4^?-acetone, add pure acetone to make 50 ml and mix well.
8. Use repeater pipettor to dispense 1.5 ml into each cryovial. Work quickly, but not carelessly. Cap cryovials as soon as they are filled.
9. Add LN2 to Styrafoam box to a level that will cover cryovials in rack.
10. Slowly lower rack into LN2. Vials must remain upright so fixative will remain in the bottom of the vial.
11. When completely frozen, transfer vials to LN2 storage device until ready to use.

• Sample record sheet:

Equipment operation

• Wear oxygen monitor and fill AFS through funnel with liquid nitrogen.
• Warm up sample well to 30C for 30 min to remove all moisture.
• After heat cycle fill sample well with reagent methanol
• Program substitution sequence
  • If a sequence is running press pause and hold until you hear three beeps
• Begin program and pause until starting temperature is reached
• Insert samples into AFS sample well
• Begin freeze substitution cycle

• Set ALLOWTOPICVIEW =

-- KdDerr - 02 Sep 2009

Principles & Protocols

Protocols - Freeze Substitution

Jump to Principles

Solution Prepartation

1. Label, with the #2 pencil, about 35 Nalgene 2.0 ml cryovials.
2. Put vials in vial rack with tops off.
3. Make up stock solution of 5% uranyl acetate in methanol by adding 0.1 g of uranyl acetate to 2 ml pure methanol, cover with foil and put on rocker to dissolve. It should dissolve in about 10 minutes, but if it doesn't, just let it rock longer. Different vintages of uranyl acetate crystals seem to dissolve at different rates.
4. Dip a 1 g OsO4^? ampule for about 10 seconds into liquid nitrogen to loosen crystals from glass.
5. Fill 50 ml conical tube with 45 ml pure acetone.
6. Add 1 g OsO4^? crystals to the 45 ml of acetone, cover and mix until completely dissolved.
7. Add 1 ml 5% uranyl acetate stock to OsO4^?-acetone, add pure acetone to make 50 ml and mix well.
8. Use repeater pipettor to dispense 1.5 ml into each cryovial. Work quickly, but not carelessly. Cap cryovials as soon as they are filled.
9. Add LN2 to Styrafoam box to a level that will cover cryovials in rack.
10. Slowly lower rack into LN2. Vials must remain upright so fixative will remain in the bottom of the vial.
11. When completely frozen, transfer vials to LN2 storage device until ready to use.

• Sample record sheet:

Equipment operation

• Wear oxygen monitor and fill AFS through funnel with liquid nitrogen.
• Warm up sample well to 30C for 30 min to remove all moisture.
• After heat cycle fill sample well with reagent methanol
• Program substitution sequence
  • If a sequence is running press pause and hold until you hear three beeps
• Begin program and pause until starting temperature is reached
• Insert samples into AFS sample well
• Begin freeze substitution cycle

• Set ALLOWTOPICVIEW =

-- KdDerr - 02 Sep 2009

Principles & Protocols

Protocols - Freeze Substitution

Jump to Principles

Solution Prepartation

Here is Kent Mc Donald's recipe for preparing FS solutions (from Exhibit C):

1. Label, with the #2 pencil, about 35 Nalgene 2.0 ml cryovials.
2. Put vials in vial rack with tops off.
3. Make up stock solution of 5% uranyl acetate in methanol by adding 0.1 g of uranyl acetate to 2 ml pure methanol, cover with foil and put on rocker to dissolve. It should dissolve in about 10 minutes, but if it doesn't, just let it rock longer. Different vintages of uranyl acetate crystals seem to dissolve at different rates.
4. Dip a 1 g OsO4^? ampule for about 10 seconds into liquid nitrogen to loosen crystals from glass.
5. Fill 50 ml conical tube with 45 ml pure acetone.
6. Add 1 g OsO4^? crystals to the 45 ml of acetone, cover and mix until completely dissolved.
7. Add 1 ml 5% uranyl acetate stock to OsO4^?-acetone, add pure acetone to make 50 ml and mix well.
8. Use repeater pipettor to dispense 1.5 ml into each cryovial. Work quickly, but not carelessly. Cap cryovials as soon as they are filled.
9. Add LN2 to Styrafoam box to a level that will cover cryovials in rack.
10. Slowly lower rack into LN2. Vials must remain upright so fixative will remain in the bottom of the vial.
11. When completely frozen, transfer vials to LN2 storage device until ready to use.

• Wear oxygen monitor and fill AFS through funnel with liquid nitrogen.
• Warm up sample well to 30C for 30 min to remove all moisture.

• After heat cycle fill sample well with reagent methanol
• Program substitution sequence
  • If a sequence is running press pause and hold until you hear three beeps
• Begin program and pause until starting temperature is reached

• Insert samples into AFS sample well
• Begin freeze substitution cycle

• Set ALLOWTOPICVIEW =

-- KdDerr - 02 Sep 2009

Principles & Protocols

Protocols - Freeze Substitution

Jump to Principles

Solution Prepartation

Here is Kent Mc Donald's recipe for preparing FS solutions (from Exhibit C):

1. Label, with the #2 pencil, about 35 Nalgene 2.0 ml cryovials.
2. Put vials in vial rack with tops off.
3. Make up stock solution of 5% uranyl acetate in methanol by adding 0.1 g of uranyl acetate to 2 ml pure methanol, cover with foil and put on rocker to dissolve. It should dissolve in about 10 minutes, but if it doesn't, just let it rock longer. Different vintages of uranyl acetate crystals seem to dissolve at different rates.
4. Dip a 1 g OsO4^? ampule for about 10 seconds into liquid nitrogen to loosen crystals from glass.
5. Fill 50 ml conical tube with 45 ml pure acetone.
6. Add 1 g OsO4^? crystals to the 45 ml of acetone, cover and mix until completely dissolved.
7. Add 1 ml 5% uranyl acetate stock to OsO4^?-acetone, add pure acetone to make 50 ml and mix well.
8. Use repeater pipettor to dispense 1.5 ml into each cryovial. Work quickly, but not carelessly. Cap cryovials as soon as they are filled.
9. Add LN2 to Styrafoam box to a level that will cover cryovials in rack.
10. Slowly lower rack into LN2. Vials must remain upright so fixative will remain in the bottom of the vial.
11. When completely frozen, transfer vials to LN2 storage device until ready to use.

Freeze Substitution Guidelines

You will need:

• Gloves
• Oxygen Moniter
• Cryovials
• Substitution fluid (e.g. OsO4 solution^?)
• Methanol
• Ethanol
• Pencil
• Large forceps
• Styrofoam box to work in
• Pipettes
• LN2 (tank full)
• Embedding_Schedule_for_HPF_Samples.doc:

Procedure:

• Wear oxygen monitor and fill AFS through funnel with liquid nitrogen.
• Warm up sample well to 30C for 30 min to remove all moisture.

• After heat cycle fill sample well with reagent methanol
• Program substitution sequence
  • If a sequence is running press pause and hold until you hear three beeps
• Begin program and pause until starting temperature is reached

• Label Nalgene cryotubes with pencil
• Prepare substituion solution (e.g. OsO4 solution^?)
• Transfer frozen hats to frozen substitution solution under liquid nitrogen environment
• Place maximum of two specimen per cryotube
• Insert samples into AFS sample well
• Begin freeze substitution cycle
• Set ALLOWTOPICVIEW =

-- KdDerr - 02 Sep 2009

Principles & Protocols

Protocols - Freeze Substitution

Solution Prepartation

Here is Kent Mc Donald's recipe for preparing FS solutions (from Exhibit C):

1. Label, with the #2 pencil, about 35 Nalgene 2.0 ml cryovials.
2. Put vials in vial rack with tops off.
3. Make up stock solution of 5% uranyl acetate in methanol by adding 0.1 g of uranyl acetate to 2 ml pure methanol, cover with foil and put on rocker to dissolve. It should dissolve in about 10 minutes, but if it doesn't, just let it rock longer. Different vintages of uranyl acetate crystals seem to dissolve at different rates.
4. Dip a 1 g OsO4^? ampule for about 10 seconds into liquid nitrogen to loosen crystals from glass.
5. Fill 50 ml conical tube with 45 ml pure acetone.
6. Add 1 g OsO4^? crystals to the 45 ml of acetone, cover and mix until completely dissolved.
7. Add 1 ml 5% uranyl acetate stock to OsO4^?-acetone, add pure acetone to make 50 ml and mix well.
8. Use repeater pipettor to dispense 1.5 ml into each cryovial. Work quickly, but not carelessly. Cap cryovials as soon as they are filled.
9. Add LN2 to Styrafoam box to a level that will cover cryovials in rack.
10. Slowly lower rack into LN2. Vials must remain upright so fixative will remain in the bottom of the vial.
11. When completely frozen, transfer vials to LN2 storage device until ready to use.

Freeze Substitution Guidelines

You will need:

• Gloves
• Oxygen Moniter
• Cryovials
• Substitution fluid (e.g. OsO4 solution^?)
• Methanol
• Ethanol
• Pencil
• Large forceps
• Styrofoam box to work in
• Pipettes
• LN2 (tank full)
• Embedding_Schedule_for_HPF_Samples.doc:

Procedure:

• Wear oxygen monitor and fill AFS through funnel with liquid nitrogen.
• Warm up sample well to 30C for 30 min to remove all moisture.

• After heat cycle fill sample well with reagent methanol
• Program substitution sequence
  • If a sequence is running press pause and hold until you hear three beeps
• Begin program and pause until starting temperature is reached

• Label Nalgene cryotubes with pencil
• Prepare substituion solution (e.g. OsO4 solution^?)
• Transfer frozen hats to frozen substitution solution under liquid nitrogen environment
• Place maximum of two specimen per cryotube
• Insert samples into AFS sample well
• Begin freeze substitution cycle
• Set ALLOWTOPICVIEW =

-- KdDerr - 02 Sep 2009

Principles & Protocols

Protocols - Freeze Substitution

Jump to Principles

Solution Prepartation

Here is Kent Mc Donald's recipe for preparing FS solutions (from Exhibit C):

1. Label, with the #2 pencil, about 35 Nalgene 2.0 ml cryovials.
2. Put vials in vial rack with tops off.
3. Make up stock solution of 5% uranyl acetate in methanol by adding 0.1 g of uranyl acetate to 2 ml pure methanol, cover with foil and put on rocker to dissolve. It should dissolve in about 10 minutes, but if it doesn't, just let it rock longer. Different vintages of uranyl acetate crystals seem to dissolve at different rates.
4. Dip a 1 g OsO4^? ampule for about 10 seconds into liquid nitrogen to loosen crystals from glass.
5. Fill 50 ml conical tube with 45 ml pure acetone.
6. Add 1 g OsO4^? crystals to the 45 ml of acetone, cover and mix until completely dissolved.
7. Add 1 ml 5% uranyl acetate stock to OsO4^?-acetone, add pure acetone to make 50 ml and mix well.
8. Use repeater pipettor to dispense 1.5 ml into each cryovial. Work quickly, but not carelessly. Cap cryovials as soon as they are filled.
9. Add LN2 to Styrafoam box to a level that will cover cryovials in rack.
10. Slowly lower rack into LN2. Vials must remain upright so fixative will remain in the bottom of the vial.
11. When completely frozen, transfer vials to LN2 storage device until ready to use.

Freeze Substitution Guidelines

You will need:

• Gloves
• Oxygen Moniter
• Cryovials
• Substitution fluid (e.g. OsO4 solution^?)
• Methanol
• Ethanol
• Pencil
• Large forceps
• Styrofoam box to work in
• Pipettes
• LN2 (tank full)
• Embedding_Schedule_for_HPF_Samples.doc:

Procedure:

• Wear oxygen monitor and fill AFS through funnel with liquid nitrogen.
• Warm up sample well to 30C for 30 min to remove all moisture.

• After heat cycle fill sample well with reagent methanol
• Program substitution sequence
  • If a sequence is running press pause and hold until you hear three beeps
• Begin program and pause until starting temperature is reached

• Label Nalgene cryotubes with pencil
• Prepare substituion solution (e.g. OsO4 solution^?)
• Transfer frozen hats to frozen substitution solution under liquid nitrogen environment
• Place maximum of two specimen per cryotube
• Insert samples into AFS sample well
• Begin freeze substitution cycle
• Set ALLOWTOPICVIEW =

-- KdDerr - 02 Sep 2009

Solution Prepartation

Here is Kent Mc Donald's recipe for preparing FS solutions (from Exhibit C):

1. Label, with the #2 pencil, about 35 Nalgene 2.0 ml cryovials.
2. Put vials in vial rack with tops off.
3. Make up stock solution of 5% uranyl acetate in methanol by adding 0.1 g of uranyl acetate to 2 ml pure methanol, cover with foil and put on rocker to dissolve. It should dissolve in about 10 minutes, but if it doesn't, just let it rock longer. Different vintages of uranyl acetate crystals seem to dissolve at different rates.
4. Dip a 1 g OsO4^? ampule for about 10 seconds into liquid nitrogen to loosen crystals from glass.
5. Fill 50 ml conical tube with 45 ml pure acetone.
6. Add 1 g OsO4^? crystals to the 45 ml of acetone, cover and mix until completely dissolved.
7. Add 1 ml 5% uranyl acetate stock to OsO4^?-acetone, add pure acetone to make 50 ml and mix well.
8. Use repeater pipettor to dispense 1.5 ml into each cryovial. Work quickly, but not carelessly. Cap cryovials as soon as they are filled.
9. Add LN2 to Styrafoam box to a level that will cover cryovials in rack.
10. Slowly lower rack into LN2. Vials must remain upright so fixative will remain in the bottom of the vial.
11. When completely frozen, transfer vials to LN2 storage device until ready to use.

Freeze Substitution Guidelines

You will need:

• Gloves
• Oxygen Moniter
• Cryovials
• Substitution fluid (e.g. OsO4 solution^?)
• Methanol
• Ethanol
• Pencil
• Large forceps
• Styrofoam box to work in
• Pipettes
• LN2 (tank full)
• Embedding_Schedule_for_HPF_Samples.doc:

Procedure:

• Wear oxygen monitor and fill AFS through funnel with liquid nitrogen.
• Warm up sample well to 30C for 30 min to remove all moisture.

• After heat cycle fill sample well with reagent methanol
• Program substitution sequence
  • If a sequence is running press pause and hold until you hear three beeps
• Begin program and pause until starting temperature is reached

• Label Nalgene cryotubes with pencil
• Prepare substituion solution (e.g. OsO4 solution^?)
• Transfer frozen hats to frozen substitution solution under liquid nitrogen environment
• Place maximum of two specimen per cryotube
• Insert samples into AFS sample well
• Begin freeze substitution cycle
• Set ALLOWTOPICVIEW =

-- KdDerr - 02 Sep 2009

Solution Prepartation

Here is Kent Mc Donald's recipe for preparing FS solutions (from Exhibit C):

1. Label, with the #2 pencil, about 35 Nalgene 2.0 ml cryovials.
2. Put vials in vial rack with tops off.
3. Make up stock solution of 5% uranyl acetate in methanol by adding 0.1 g of uranyl acetate to 2 ml pure methanol, cover with foil and put on rocker to dissolve. It should dissolve in about 10 minutes, but if it doesn't, just let it rock longer. Different vintages of uranyl acetate crystals seem to dissolve at different rates.
4. Dip a 1 g OsO4^? ampule for about 10 seconds into liquid nitrogen to loosen crystals from glass.
5. Fill 50 ml conical tube with 45 ml pure acetone.
6. Add 1 g OsO4^? crystals to the 45 ml of acetone, cover and mix until completely dissolved.
7. Add 1 ml 5% uranyl acetate stock to OsO4^?-acetone, add pure acetone to make 50 ml and mix well.
8. Use repeater pipettor to dispense 1.5 ml into each cryovial. Work quickly, but not carelessly. Cap cryovials as soon as they are filled.
9. Add LN2 to Styrafoam box to a level that will cover cryovials in rack.
10. Slowly lower rack into LN2. Vials must remain upright so fixative will remain in the bottom of the vial.
11. When completely frozen, transfer vials to LN2 storage device until ready to use.

Freeze Substitution Guidelines

You will need:

• Gloves
• Oxygen Moniter
• Cryovials
• Substitution fluid (e.g. OsO4 solution^?)
• Methanol
• Ethanol
• Pencil
• Large forceps
• Styrofoam box to work in
• Pipettes
• LN2 (tank full)
• Embedding_Schedule_for_HPF_Samples.doc:

Procedure:

• Wear oxygen monitor and fill AFS through funnel with liquid nitrogen.
• Warm up sample well to 30C for 30 min to remove all moisture.

• After heat cycle fill sample well with reagent methanol
• Program substitution sequence
  • If a sequence is running press pause and hold until you hear three beeps
• Begin program and pause until starting temperature is reached

• Label Nalgene cryotubes with pencil
• Prepare substituion solution (e.g. OsO4 solution^?)
• Transfer frozen hats to frozen substitution solution under liquid nitrogen environment
• Place maximum of two specimen per cryotube
• Insert samples into AFS sample well
• Begin freeze substitution cycle
• Set ALLOWTOPICVIEW =

-- KdDerr - 02 Sep 2009