Difference: GetYourEMdata (1 vs. 14)

Revision 1429 Nov 2011 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

How to retrieve your EM data

Contents

How to download your data from NYSBC

Changed:
<
<
  • You should already be set up with an sftp account to sftp.nysbc.net
>
>
  • You should already be set up with an sftp account to sftp.nysbc.org
  
   sftp <your username>@sftp.nysbc.org
   password: <your password>
   sftp> cd /mnt/cemdata 
   sftp> ls
   jeol_1230  jeol_2100  jeol_3200  tecnai

  • You will see a list of microscope directories: j1230 ; j2100 ; j2100 ; tecnai
  • Change to the appropriate microscope, then to your directory 
       sftp> cd tecnai/<your username>
   sftp> ls
   temdata
   sftp> cd temdata
   sftp> ls
   [... list of files and directories]
  sftp>  get myimage.dat
when done: 
   sftp> bye

Hints

  • Don't put any spaces in filenames or directory names
  • If you absolutely insist on putting spaces in file/directory names, need to enclose them with ' ' when using sftp. 
   sftp get 'my filename that has spaces.mrc'
  • Can use * and ? to get multiple files
    • * matches any number of characters
    • ? matches any single character
    • example: image*.mrc will match image.mrc, image001.mrc, image_bunchofstuff.mrc
    • image???.mrc will match image001.mrc, but not image.mrc, image01.mrc
  • For obvious reasons, don't put * or ? in your file or directory names

  • If you are unable to log in to the sftp server, contact rice@nysbc.org

GUI for transfer

Client Software

SFTP can be run from the command line but this method has some limitations. To be able to transfer multiple files or directories, client software is needed.
  1. SSH Secure Shell for Workstations - Compatible client with both Windows and Unix is available at -
    http://www.ssh.com/support/downloads/secureshellwks/non-commercial.html. Unix versions may require complilation.
  2. GFTP - GFTP is a compatible client for Linux systems available on Linux 7.2 and higher. It can be downloaded from
    http://gftp.org. To access the NYSBC SFTP Server Version 2.0.9 or higher is needed.

Connecting To The SFTP Server

  • Using Windows GUI with SSH shell Type in Host Name and your User Name. Leave all other settings the same, as shown in figure 1

Figure 1

  • Enter Password at password screen

Figure 2

  • Change to the /mnt/cemdata/ directory to view a list of microscopes.

Figure 3

  • Change to your appropriate directory and transfer files using drag and drop or select, right click, and download.
  • Using SFTP2
    1. Type sftp2<username>@sftp.nysbc.net into a terminal window, enter password when prompted.
    2. Change directory to /nysbc_nmr.
    3. Spectrometers are listed in the /nysbc_nmr directory.

SFTP2 allows use of the following commands -

ascii auto binary cd close debug get
getext help lcd lls lmkdir lopen lpwd
lreadlink lrename lrm lrmdir ls lsroots lsymlink
mget mkdir mput open put pwd quit
readlink rename rm rmdir setext symlink verbose

  • Set ALLOWTOPICVIEW =

-- BillRice - 02 May 2008

Revision 1323 Nov 2011 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"

How to retrieve your EM data

Contents

How to download your data from NYSBC

  • You should already be set up with an sftp account to sftp.nysbc.net

Changed:
<
<		 sftp @sftp.nysbc.net
>
>		 sftp @sftp.nysbc.org
 
password
sftp> cd /mnt/cemdata sftp> ls jeol_1230 jeol_2100 jeol_3200 tecnai

  • You will see a list of microscope directories: j1230 ; j2100 ; j2100 ; tecnai
  • Change to the appropriate microscope, then to your directory 
       sftp> cd tecnai/<your username>
   sftp> ls
   temdata
   sftp> cd temdata
   sftp> ls
   [... list of files and directories]
  sftp>  get myimage.dat
when done: 
   sftp> bye

Hints

  • Don't put any spaces in filenames or directory names
  • If you absolutely insist on putting spaces in file/directory names, need to enclose them with ' ' when using sftp. 
   sftp get 'my filename that has spaces.mrc'
  • Can use * and ? to get multiple files
    • * matches any number of characters
    • ? matches any single character
    • example: image*.mrc will match image.mrc, image001.mrc, image_bunchofstuff.mrc
    • image???.mrc will match image001.mrc, but not image.mrc, image01.mrc
  • For obvious reasons, don't put * or ? in your file or directory names

  • If you are unable to log in to the sftp server, contact rice@nysbc.org

GUI for transfer

Client Software

SFTP can be run from the command line but this method has some limitations. To be able to transfer multiple files or directories, client software is needed.
  1. SSH Secure Shell for Workstations - Compatible client with both Windows and Unix is available at -
    http://www.ssh.com/support/downloads/secureshellwks/non-commercial.html. Unix versions may require complilation.
  2. GFTP - GFTP is a compatible client for Linux systems available on Linux 7.2 and higher. It can be downloaded from
    http://gftp.org. To access the NYSBC SFTP Server Version 2.0.9 or higher is needed.

Connecting To The SFTP Server

  • Using Windows GUI with SSH shell Type in Host Name and your User Name. Leave all other settings the same, as shown in figure 1

Figure 1

  • Enter Password at password screen

Figure 2

  • Change to the /mnt/cemdata/ directory to view a list of microscopes.

Figure 3

  • Change to your appropriate directory and transfer files using drag and drop or select, right click, and download.
  • Using SFTP2
    1. Type sftp2<username>@sftp.nysbc.net into a terminal window, enter password when prompted.
    2. Change directory to /nysbc_nmr.
    3. Spectrometers are listed in the /nysbc_nmr directory.

SFTP2 allows use of the following commands -

ascii auto binary cd close debug get
getext help lcd lls lmkdir lopen lpwd
lreadlink lrename lrm lrmdir ls lsroots lsymlink
mget mkdir mput open put pwd quit
readlink rename rm rmdir setext symlink verbose

  • Set ALLOWTOPICVIEW =

-- BillRice - 02 May 2008

Revision 1226 Aug 2009 - Main.KdDerr

 
META TOPICPARENT name="CemfacGroup"
Changed:
<
<		How to retrieve your EM data
>
>

How to retrieve your EM data

 
Deleted:
<
<
Interested in EM? Using CEMfac? Principles & Protocols CEMfac Equipment Seminars & Courses
CEMfac Home? CEM Introduction Microscope Schedule NYSBC Directory Cryo-EM public website
 
Contents

How to download your data from NYSBC

  • You should already be set up with an sftp account to sftp.nysbc.net 
       sftp <your username>@sftp.nysbc.net
   password: <your password>
   sftp> cd /mnt/cemdata 
   sftp> ls
   jeol_1230  jeol_2100  jeol_3200  tecnai

  • You will see a list of microscope directories: j1230 ; j2100 ; j2100 ; tecnai
  • Change to the appropriate microscope, then to your directory 
       sftp> cd tecnai/<your username>
   sftp> ls
   temdata
   sftp> cd temdata
   sftp> ls
   [... list of files and directories]
  sftp>  get myimage.dat
when done: 
   sftp> bye

Hints

  • Don't put any spaces in filenames or directory names
  • If you absolutely insist on putting spaces in file/directory names, need to enclose them with ' ' when using sftp. 
   sftp get 'my filename that has spaces.mrc'
  • Can use * and ? to get multiple files
    • * matches any number of characters
    • ? matches any single character
    • example: image*.mrc will match image.mrc, image001.mrc, image_bunchofstuff.mrc
    • image???.mrc will match image001.mrc, but not image.mrc, image01.mrc
  • For obvious reasons, don't put * or ? in your file or directory names

  • If you are unable to log in to the sftp server, contact rice@nysbc.org

GUI for transfer

Client Software

SFTP can be run from the command line but this method has some limitations. To be able to transfer multiple files or directories, client software is needed.
  1. SSH Secure Shell for Workstations - Compatible client with both Windows and Unix is available at -
    http://www.ssh.com/support/downloads/secureshellwks/non-commercial.html. Unix versions may require complilation.
  2. GFTP - GFTP is a compatible client for Linux systems available on Linux 7.2 and higher. It can be downloaded from
    http://gftp.org. To access the NYSBC SFTP Server Version 2.0.9 or higher is needed.

Connecting To The SFTP Server

  • Using Windows GUI with SSH shell Type in Host Name and your User Name. Leave all other settings the same, as shown in figure 1

Figure 1

  • Enter Password at password screen

Figure 2

  • Change to the /mnt/cemdata/ directory to view a list of microscopes.

Figure 3

  • Change to your appropriate directory and transfer files using drag and drop or select, right click, and download.
  • Using SFTP2
    1. Type sftp2<username>@sftp.nysbc.net into a terminal window, enter password when prompted.
    2. Change directory to /nysbc_nmr.
    3. Spectrometers are listed in the /nysbc_nmr directory.

SFTP2 allows use of the following commands -

ascii auto binary cd close debug get
getext help lcd lls lmkdir lopen lpwd
lreadlink lrename lrm lrmdir ls lsroots lsymlink
mget mkdir mput open put pwd quit
readlink rename rm rmdir setext symlink verbose

  • Set ALLOWTOPICVIEW =

-- BillRice - 02 May 2008

Revision 1112 Feb 2009 - Main.KakoliMitra

 
META TOPICPARENT name="CemfacGroup"
Added:
>
>
How to retrieve your EM data
Interested in EM? Using CEMfac? Principles & Protocols CEMfac Equipment Seminars & Courses
CEMfac Home? CEM Introduction Microscope Schedule NYSBC Directory Cryo-EM public website
 Contents

How to download your data from NYSBC

  • You should already be set up with an sftp account to sftp.nysbc.net 
       sftp <your username>@sftp.nysbc.net
   password: <your password>
   sftp> cd /mnt/cemdata 
   sftp> ls
   jeol_1230  jeol_2100  jeol_3200  tecnai

  • You will see a list of microscope directories: j1230 ; j2100 ; j2100 ; tecnai
  • Change to the appropriate microscope, then to your directory 
       sftp> cd tecnai/<your username>
   sftp> ls
   temdata
   sftp> cd temdata
   sftp> ls
   [... list of files and directories]
  sftp>  get myimage.dat
when done: 
   sftp> bye

Hints

  • Don't put any spaces in filenames or directory names
  • If you absolutely insist on putting spaces in file/directory names, need to enclose them with ' ' when using sftp. 
   sftp get 'my filename that has spaces.mrc'
  • Can use * and ? to get multiple files
    • * matches any number of characters
    • ? matches any single character
    • example: image*.mrc will match image.mrc, image001.mrc, image_bunchofstuff.mrc
    • image???.mrc will match image001.mrc, but not image.mrc, image01.mrc
  • For obvious reasons, don't put * or ? in your file or directory names

  • If you are unable to log in to the sftp server, contact rice@nysbc.org

GUI for transfer

Client Software

SFTP can be run from the command line but this method has some limitations. To be able to transfer multiple files or directories, client software is needed.
  1. SSH Secure Shell for Workstations - Compatible client with both Windows and Unix is available at -
    http://www.ssh.com/support/downloads/secureshellwks/non-commercial.html. Unix versions may require complilation.
  2. GFTP - GFTP is a compatible client for Linux systems available on Linux 7.2 and higher. It can be downloaded from
    http://gftp.org. To access the NYSBC SFTP Server Version 2.0.9 or higher is needed.

Connecting To The SFTP Server

  • Using Windows GUI with SSH shell Type in Host Name and your User Name. Leave all other settings the same, as shown in figure 1

Figure 1

  • Enter Password at password screen

Figure 2

  • Change to the /mnt/cemdata/ directory to view a list of microscopes.

Figure 3

  • Change to your appropriate directory and transfer files using drag and drop or select, right click, and download.
  • Using SFTP2
    1. Type sftp2<username>@sftp.nysbc.net into a terminal window, enter password when prompted.
    2. Change directory to /nysbc_nmr.
    3. Spectrometers are listed in the /nysbc_nmr directory.

SFTP2 allows use of the following commands -

ascii auto binary cd close debug get
getext help lcd lls lmkdir lopen lpwd
lreadlink lrename lrm lrmdir ls lsroots lsymlink
mget mkdir mput open put pwd quit
readlink rename rm rmdir setext symlink verbose

  • Set ALLOWTOPICVIEW =

-- BillRice - 02 May 2008

Revision 1023 May 2008 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"
Contents

How to download your data from NYSBC

  • You should already be set up with an sftp account to sftp.nysbc.net 
       sftp <your username>@sftp.nysbc.net
   password: <your password>
   sftp> cd /mnt/cemdata 
   sftp> ls
   jeol_1230  jeol_2100  jeol_3200  tecnai

  • You will see a list of microscope directories: j1230 ; j2100 ; j2100 ; tecnai
  • Change to the appropriate microscope, then to your directory 
       sftp> cd tecnai/<your username>
   sftp> ls
   temdata
   sftp> cd temdata
   sftp> ls
   [... list of files and directories]
  sftp>  get myimage.dat
when done: 
   sftp> bye

Hints

  • Don't put any spaces in filenames or directory names
  • If you absolutely insist on putting spaces in file/directory names, need to enclose them with ' ' when using sftp. 
   sftp get 'my filename that has spaces.mrc'
  • Can use * and ? to get multiple files
    • * matches any number of characters
    • ? matches any single character
    • example: image*.mrc will match image.mrc, image001.mrc, image_bunchofstuff.mrc
    • image???.mrc will match image001.mrc, but not image.mrc, image01.mrc
  • For obvious reasons, don't put * or ? in your file or directory names

  • If you are unable to log in to the sftp server, contact rice@nysbc.org

GUI for transfer

Client Software

SFTP can be run from the command line but this method has some limitations. To be able to transfer multiple files or directories, client software is needed.
  1. SSH Secure Shell for Workstations - Compatible client with both Windows and Unix is available at -
    http://www.ssh.com/support/downloads/secureshellwks/non-commercial.html. Unix versions may require complilation.
  2. GFTP - GFTP is a compatible client for Linux systems available on Linux 7.2 and higher. It can be downloaded from
    http://gftp.org. To access the NYSBC SFTP Server Version 2.0.9 or higher is needed.

Connecting To The SFTP Server

  • Using Windows GUI with SSH shell Type in Host Name and your User Name. Leave all other settings the same, as shown in figure 1

Figure 1

  • Enter Password at password screen

Figure 2

Changed:
<
<
  • Change to the /mnt.cemdata/ directory to view a list of microscopes.
>
>
  • Change to the /mnt/cemdata/ directory to view a list of microscopes.
 Figure 3

  • Change to your appropriate directory and transfer files using drag and drop or select, right click, and download.
  • Using SFTP2
    1. Type sftp2<username>@sftp.nysbc.net into a terminal window, enter password when prompted.
    2. Change directory to /nysbc_nmr.
    3. Spectrometers are listed in the /nysbc_nmr directory.

SFTP2 allows use of the following commands -

ascii auto binary cd close debug get
getext help lcd lls lmkdir lopen lpwd
lreadlink lrename lrm lrmdir ls lsroots lsymlink
mget mkdir mput open put pwd quit
readlink rename rm rmdir setext symlink verbose

  • Set ALLOWTOPICVIEW =

-- BillRice - 02 May 2008

Revision 923 May 2008 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"
Contents

How to download your data from NYSBC

  • You should already be set up with an sftp account to sftp.nysbc.net 
       sftp <your username>@sftp.nysbc.net
   password: <your password>
   sftp> cd /mnt/cemdata 
   sftp> ls
   jeol_1230  jeol_2100  jeol_3200  tecnai

  • You will see a list of microscope directories: j1230 ; j2100 ; j2100 ; tecnai
  • Change to the appropriate microscope, then to your directory 
       sftp> cd tecnai/<your username>
   sftp> ls
   temdata
   sftp> cd temdata
   sftp> ls
   [... list of files and directories]
  sftp>  get myimage.dat
when done: 
   sftp> bye

Hints

  • Don't put any spaces in filenames or directory names
  • If you absolutely insist on putting spaces in file/directory names, need to enclose them with ' ' when using sftp. 
   sftp get 'my filename that has spaces.mrc'
  • Can use * and ? to get multiple files
    • * matches any number of characters
    • ? matches any single character
    • example: image*.mrc will match image.mrc, image001.mrc, image_bunchofstuff.mrc
    • image???.mrc will match image001.mrc, but not image.mrc, image01.mrc
  • For obvious reasons, don't put * or ? in your file or directory names

  • If you are unable to log in to the sftp server, contact rice@nysbc.org

GUI for transfer

Client Software

SFTP can be run from the command line but this method has some limitations. To be able to transfer multiple files or directories, client software is needed.
  1. SSH Secure Shell for Workstations - Compatible client with both Windows and Unix is available at -
    http://www.ssh.com/support/downloads/secureshellwks/non-commercial.html. Unix versions may require complilation.
  2. GFTP - GFTP is a compatible client for Linux systems available on Linux 7.2 and higher. It can be downloaded from
    http://gftp.org. To access the NYSBC SFTP Server Version 2.0.9 or higher is needed.

Connecting To The SFTP Server

  • Using Windows GUI with SSH shell Type in Host Name and your User Name. Leave all other settings the same, as shown in figure 1

Figure 1

  • Enter Password at password screen

Figure 2

Changed:
<
<
  • Change to the /nysbc_nmr directory to view a list of spectrometers.
>
>
  • Change to the /mnt.cemdata/ directory to view a list of microscopes.
 Figure 3

  • Change to your appropriate directory and transfer files using drag and drop or select, right click, and download.
  • Using SFTP2
    1. Type sftp2<username>@sftp.nysbc.net into a terminal window, enter password when prompted.
    2. Change directory to /nysbc_nmr.
    3. Spectrometers are listed in the /nysbc_nmr directory.

SFTP2 allows use of the following commands -

ascii auto binary cd close debug get
getext help lcd lls lmkdir lopen lpwd
lreadlink lrename lrm lrmdir ls lsroots lsymlink
mget mkdir mput open put pwd quit
readlink rename rm rmdir setext symlink verbose

  • Set ALLOWTOPICVIEW =

-- BillRice - 02 May 2008

Revision 823 May 2008 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"
Contents

How to download your data from NYSBC

  • You should already be set up with an sftp account to sftp.nysbc.net 
       sftp <your username>@sftp.nysbc.net
   password: <your password>
   sftp> cd /mnt/cemdata 
   sftp> ls
   jeol_1230  jeol_2100  jeol_3200  tecnai

  • You will see a list of microscope directories: j1230 ; j2100 ; j2100 ; tecnai
  • Change to the appropriate microscope, then to your directory 
       sftp> cd tecnai/<your username>
   sftp> ls
   temdata
   sftp> cd temdata
   sftp> ls
   [... list of files and directories]
  sftp>  get myimage.dat
when done: 
   sftp> bye

Hints

  • Don't put any spaces in filenames or directory names
  • If you absolutely insist on putting spaces in file/directory names, need to enclose them with ' ' when using sftp. 
   sftp get 'my filename that has spaces.mrc'
  • Can use * and ? to get multiple files
    • * matches any number of characters
    • ? matches any single character
    • example: image*.mrc will match image.mrc, image001.mrc, image_bunchofstuff.mrc
    • image???.mrc will match image001.mrc, but not image.mrc, image01.mrc
  • For obvious reasons, don't put * or ? in your file or directory names

  • If you are unable to log in to the sftp server, contact rice@nysbc.org
Added:
>
>

GUI for transfer

Client Software

SFTP can be run from the command line but this method has some limitations. To be able to transfer multiple files or directories, client software is needed.
  1. SSH Secure Shell for Workstations - Compatible client with both Windows and Unix is available at -
    http://www.ssh.com/support/downloads/secureshellwks/non-commercial.html. Unix versions may require complilation.
  2. GFTP - GFTP is a compatible client for Linux systems available on Linux 7.2 and higher. It can be downloaded from
    http://gftp.org. To access the NYSBC SFTP Server Version 2.0.9 or higher is needed.

Connecting To The SFTP Server

  • Using Windows GUI with SSH shell Type in Host Name and your User Name. Leave all other settings the same, as shown in figure 1

Figure 1

  • Enter Password at password screen

Figure 2

  • Change to the /nysbc_nmr directory to view a list of spectrometers.

Figure 3

  • Change to your appropriate directory and transfer files using drag and drop or select, right click, and download.
  • Using SFTP2
    1. Type sftp2<username>@sftp.nysbc.net into a terminal window, enter password when prompted.
    2. Change directory to /nysbc_nmr.
    3. Spectrometers are listed in the /nysbc_nmr directory.

SFTP2 allows use of the following commands -

ascii auto binary cd close debug get
getext help lcd lls lmkdir lopen lpwd
lreadlink lrename lrm lrmdir ls lsroots lsymlink
mget mkdir mput open put pwd quit
readlink rename rm rmdir setext symlink verbose
 
  • Set ALLOWTOPICVIEW =

-- BillRice - 02 May 2008

Revision 702 May 2008 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"
Contents

How to download your data from NYSBC

  • You should already be set up with an sftp account to sftp.nysbc.net 
       sftp <your username>@sftp.nysbc.net
   password: <your password>
   sftp> cd /mnt/cemdata 
   sftp> ls
   jeol_1230  jeol_2100  jeol_3200  tecnai

  • You will see a list of microscope directories: j1230 ; j2100 ; j2100 ; tecnai
  • Change to the appropriate microscope, then to your directory 
       sftp> cd tecnai/<your username>
   sftp> ls
   temdata
   sftp> cd temdata
   sftp> ls
   [... list of files and directories]
  sftp>  get myimage.dat
when done: 
   sftp> bye

Hints

  • Don't put any spaces in filenames or directory names
  • If you absolutely insist on putting spaces in file/directory names, need to enclose them with ' ' when using sftp. 
   sftp get 'my filename that has spaces.mrc'
  • Can use * and ? to get multiple files
    • * matches any number of characters
    • ? matches any single character
    • example: image*.mrc will match image.mrc, image001.mrc, image_bunchofstuff.mrc
    • image???.mrc will match image001.mrc, but not image.mrc, image01.mrc
Changed:
<
<
  • For obviosu reasons, don't put * or ? in your file or directory names
>
>
  • For obvious reasons, don't put * or ? in your file or directory names
 
  • If you are unable to log in to the sftp server, contact rice@nysbc.org

  • Set ALLOWTOPICVIEW =

-- BillRice - 02 May 2008

Revision 602 May 2008 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"
Contents

How to download your data from NYSBC

  • You should already be set up with an sftp account to sftp.nysbc.net 
       sftp <your username>@sftp.nysbc.net
   password: <your password>
   sftp> cd /mnt/cemdata 
   sftp> ls
   jeol_1230  jeol_2100  jeol_3200  tecnai

  • You will see a list of microscope directories: j1230 ; j2100 ; j2100 ; tecnai
  • Change to the appropriate microscope, then to your directory 
       sftp> cd tecnai/<your username>
   sftp> ls
   temdata
   sftp> cd temdata
   sftp> ls
   [... list of files and directories]
  sftp>  get myimage.dat
when done: 
   sftp> bye

Hints

  • Don't put any spaces in filenames or directory names
  • If you absolutely insist on putting spaces in file/directory names, need to enclose them with ' ' when using sftp. 
   sftp get 'my filename that has spaces.mrc'
  • Can use * and ? to get multiple files
    • * matches any number of characters
    • ? matches any single character
    • example: image*.mrc will match image.mrc, image001.mrc, image_bunchofstuff.mrc
    • image???.mrc will match image001.mrc, but not image.mrc, image01.mrc
Added:
>
>
  • For obviosu reasons, don't put * or ? in your file or directory names
 
  • If you are unable to log in to the sftp server, contact rice@nysbc.org

  • Set ALLOWTOPICVIEW =

-- BillRice - 02 May 2008

Revision 502 May 2008 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"
Contents

How to download your data from NYSBC

  • You should already be set up with an sftp account to sftp.nysbc.net 
       sftp <your username>@sftp.nysbc.net
   password: <your password>
   sftp> cd /mnt/cemdata 
   sftp> ls
   jeol_1230  jeol_2100  jeol_3200  tecnai

  • You will see a list of microscope directories: j1230 ; j2100 ; j2100 ; tecnai
  • Change to the appropriate microscope, then to your directory 
       sftp> cd tecnai/<your username>
   sftp> ls
   temdata
   sftp> cd temdata
   sftp> ls
   [... list of files and directories]
  sftp>  get myimage.dat
Added:
>
>
 when done:
Added:
>
>
  sftp> bye

Hints

  • Don't put any spaces in filenames or directory names
  • If you absolutely insist on putting spaces in file/directory names, need to enclose them with ' ' when using sftp. 
   sftp get 'my filename that has spaces.mrc'
  • Can use * and ? to get multiple files
    • * matches any number of characters
    • ? matches any single character
    • example: image*.mrc will match image.mrc, image001.mrc, image_bunchofstuff.mrc
    • image???.mrc will match image001.mrc, but not image.mrc, image01.mrc

  • If you are unable to log in to the sftp server, contact rice@nysbc.org

  • Set ALLOWTOPICVIEW =

-- BillRice - 02 May 2008

Revision 402 May 2008 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"
Contents

How to download your data from NYSBC

  • You should already be set up with an sftp account to sftp.nysbc.net 
       sftp <your username>@sftp.nysbc.net
   password: <your password>
   sftp> cd /mnt/cemdata 
   sftp> ls
   jeol_1230  jeol_2100  jeol_3200  tecnai

  • You will see a list of microscope directories: j1230 ; j2100 ; j2100 ; tecnai
  • Change to the appropriate microscope, then to your directory 
       sftp> cd tecnai/<your username>
   sftp> ls
   temdata
   sftp> cd temdata
   sftp> ls
   [... list of files and directories]
  sftp>  get myimage.dat
when done:
   sftp> bye

Hints

  • Don't put any spaces in filenames or directory names
  • If you absolutely insist on putting spaces in file/directory names, need to enclose them with ' ' when using sftp. 
   sftp get 'my filename that has spaces.mrc'
Changed:
<
<
  • Can use \* and ? to get multiple files

Sublevel topic

subsub level topic

>
>
  • Can use * and ? to get multiple files
    • * matches any number of characters
    • ? matches any single character
    • example: image*.mrc will match image.mrc, image001.mrc, image_bunchofstuff.mrc
Added:
>
>
    • image???.mrc will match image001.mrc, but not image.mrc, image01.mrc

  • If you are unable to log in to the sftp server, contact rice@nysbc.org
 
  • Set ALLOWTOPICVIEW =

-- BillRice - 02 May 2008

Revision 302 May 2008 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"
Contents

How to download your data from NYSBC

  • You should already be set up with an sftp account to sftp.nysbc.net
Changed:
<
<		 [verbatim]
>
>
  sftp @sftp.nysbc.net
password
Changed:
<
<		 cd /mnt/cemdata

[/verbatim]

>
>		 sftp> cd /mnt/cemdata sftp> ls jeol_1230 jeol_2100 jeol_3200 tecnai
Added:
>
>
  • You will see a list of microscope directories: j1230 ; j2100 ; j2100 ; tecnai
  • Change to the appropriate microscope, then to your directory 
       sftp> cd tecnai/<your username>
   sftp> ls
   temdata
   sftp> cd temdata
   sftp> ls
   [... list of files and directories]
  sftp>  get myimage.dat
when done:
   sftp> bye

Hints

  • Don't put any spaces in filenames or directory names
  • If you absolutely insist on putting spaces in file/directory names, need to enclose them with ' ' when using sftp. 
   sftp get 'my filename that has spaces.mrc'
  • Can use \* and ? to get multiple files
 

Sublevel topic

subsub level topic

  • Set ALLOWTOPICVIEW =

-- BillRice - 02 May 2008

Revision 202 May 2008 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"
Contents

How to download your data from NYSBC

Changed:
<
<
  • You should already be set up with an sftp account to sftp.nysbc.net
>
>
  • You should already be set up with an sftp account to sftp.nysbc.net
  [verbatim] sftp @sftp.nysbc.net
password
cd /mnt/cemdata

[/verbatim]

Sublevel topic

subsub level topic

  • Set ALLOWTOPICVIEW =

-- BillRice - 02 May 2008

Revision 102 May 2008 - Main.BillRice

 
META TOPICPARENT name="CemfacGroup"
Contents

How to download your data from NYSBC

  • You should already be set up with an sftp account to sftp.nysbc.net [verbatim] sftp @sftp.nysbc.net
password
cd /mnt/cemdata

[/verbatim]

Sublevel topic

subsub level topic

  • Set ALLOWTOPICVIEW =

-- BillRice - 02 May 2008

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